Technique Development for Probing RNA Structure In Vivo and Genome-Wide von Bevilacqua, Philip C., Assmann, Sarah M.

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Template-directed RNA polymerization and enhanced ribozyme catalysis inside membraneless compartments formed by coacervates von Poudyal, Raghav R., Guth-Metzler, Rebecca M., Veenis, Andrew J., Frankel, Erica A., Keating, Christine D., Bevilacqua, Philip C.

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Genome-Wide Analysis of RNA Secondary Structure von Bevilacqua, Philip C, Ritchey, Laura E, Su, Zhao, Assmann, Sarah M

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Prebiotically-relevant low polyion multivalency can improve functionality of membraneless compartments von Cakmak, Fatma Pir, Choi, Saehyun, Meyer, McCauley O., Bevilacqua, Philip C., Keating, Christine D.

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Polyanion-Assisted Ribozyme Catalysis Inside Complex Coacervates von Poudyal, Raghav R, Keating, Christine D, Bevilacqua, Philip C

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Bioreactor droplets from liposome-stabilized all-aqueous emulsions von Dewey, Daniel C., Strulson, Christopher A., Cacace, David N., Bevilacqua, Philip C., Keating, Christine D.

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Cellular conditions of weakly chelated magnesium ions strongly promote RNA stability and catalysis von Yamagami, Ryota, Bingaman, Jamie L., Frankel, Erica A., Bevilacqua, Philip C.

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Regulation of innate immunity through RNA structure and the protein kinase PKR von Nallagatla, Subba Rao, Toroney, Rebecca, Bevilacqua, Philip C

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Cooperative RNA Folding under Cellular Conditions Arises From Both Tertiary Structure Stabilization and Secondary Structure Destabilization von Leamy, Kathleen A, Yennawar, Neela H, Bevilacqua, Philip C

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Determination of in vivo RNA structure in low-abundance transcripts von Kwok, Chun Kit, Ding, Yiliang, Tang, Yin, Assmann, Sarah M., Bevilacqua, Philip C

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A stable RNA G-quadruplex within the 5'-UTR of Arabidopsis thaliana ATR mRNA inhibits translation von Kwok, Chun Kit, Ding, Yiliang, Shahid, Saima, Assmann, Sarah M, Bevilacqua, Philip C

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Quantum Mechanical/Molecular Mechanical Free Energy Simulations of the Self-Cleavage Reaction in the Hepatitis Delta Virus Ribozyme von Ganguly, Abir, Thaplyal, Pallavi, Rosta, Edina, Bevilacqua, Philip C, Hammes-Schiffer, Sharon

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In vivo-like nearest neighbor parameters improve prediction of fractional RNA base-pairing in cells von Sieg, Jacob P, Jolley, Elizabeth A, Huot, Melanie J, Babitzke, Paul, Bevilacqua, Philip C

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mRNA structural elements immediately upstream of the start codon dictate dependence upon eIF4A helicase activity von Waldron, Joseph A, Tack, David C, Ritchey, Laura E, Gillen, Sarah L, Wilczynska, Ania, Turro, Ernest, Bevilacqua, Philip C, Assmann, Sarah M, Bushell, Martin, Le Quesne, John

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Experimental demonstration and pan-structurome prediction of climate-associated riboSNitches in Arabidopsis von Ferrero-Serrano, Ángel, Sylvia, Megan M, Forstmeier, Peter C, Olson, Andrew J, Ware, Doreen, Bevilacqua, Philip C, Assmann, Sarah M

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Direct testing of natural twister ribozymes from over a thousand organisms reveals a broad tolerance for structural imperfections von McKinley, Lauren N, Meyer, McCauley O, Sebastian, Aswathy, Chang, Benjamin K, Messina, Kyle J, Albert, Istvan, Bevilacqua, Philip C

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Role of the Active Site Guanine in the glmS Ribozyme Self-Cleavage Mechanism: Quantum Mechanical/Molecular Mechanical Free Energy Simulations von Zhang, Sixue, Ganguly, Abir, Goyal, Puja, Bingaman, Jamie L, Bevilacqua, Philip C, Hammes-Schiffer, Sharon

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Mechanistic Considerations for General Acid−Base Catalysis by RNA:  Revisiting the Mechanism of the Hairpin Ribozyme von Bevilacqua, Philip C

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In vivo RNA structural probing of uracil and guanine base-pairing by 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC) von Mitchell, 3rd, David, Renda, Andrew J, Douds, Catherine A, Babitzke, Paul, Assmann, Sarah M, Bevilacqua, Philip C

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Effect of Loop Sequence and Loop Length on the Intrinsic Fluorescence of G‑Quadruplexes von Kwok, Chun Kit, Sherlock, Madeline E, Bevilacqua, Philip C

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