Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names von Douglass, Alexander P, Offei, Benjamin, Braun-Galleani, Stephanie, Coughlan, Aisling Y, Martos, Alexandre A R, Ortiz-Merino, Raúl A, Byrne, Kevin P, Wolfe, Kenneth H

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Evolutionary restoration of fertility in an interspecies hybrid yeast, by whole-genome duplication after a failed mating-type switch von Ortiz-Merino, Raúl A, Kuanyshev, Nurzhan, Braun-Galleani, Stephanie, Byrne, Kevin P, Porro, Danilo, Branduardi, Paola, Wolfe, Kenneth H

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The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species von Byrne, Kevin P, Wolfe, Kenneth H

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Identification of genetic variants of the industrial yeast Komagataella phaffii (Pichia pastoris) that contribute to increased yields of secreted heterologous proteins von Offei, Benjamin, Braun-Galleani, Stephanie, Venkatesh, Anjan, Casey, William T, O'Connor, Kevin E, Byrne, Kevin P, Wolfe, Kenneth H

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Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome von Gordon, Jonathan L, Byrne, Kevin P, Wolfe, Kenneth H

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Mating-type switching by chromosomal inversion in methylotrophic yeasts suggests an origin for the three-locus Saccharomyces cerevisiae system von Hanson, Sara J., Byrne, Kevin P., Wolfe, Kenneth H.

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Mechanisms of chromosome number evolution in yeast von Gordon, Jonathan L, Byrne, Kevin P, Wolfe, Kenneth H

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Alternative sulphur metabolism in the fungal pathogen Candida parapsilosis von Lombardi, Lisa, Salzberg, Letal I., Cinnéide, Eoin Ó, O’Brien, Caoimhe, Morio, Florent, Turner, Siobhán A., Byrne, Kevin P., Butler, Geraldine

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A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach von Proux-Wéra, Estelle, Armisén, David, Byrne, Kevin P, Wolfe, Kenneth H

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Comparative genome analysis and gene finding in Candida species using CGOB von Maguire, Sarah L, ÓhÉigeartaigh, Seán S, Byrne, Kevin P, Schröder, Markus S, O'Gaora, Peadar, Wolfe, Kenneth H, Butler, Geraldine

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Flip/flop mating-type switching in the methylotrophic yeast Ogataea polymorpha is regulated by an Efg1-Rme1-Ste12 pathway von Hanson, Sara J, Byrne, Kevin P, Wolfe, Kenneth H

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Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents von Gordon, Jonathan L, Armisén, David, Proux-Wéra, Estelle, ÓhÉigeartaigh, Seán S, Byrne, Kevin P, Wolfe, Kenneth H

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A widespread inversion polymorphism conserved among Saccharomyces species is caused by recurrent homogenization of a sporulation gene family von Salzberg, Letal I, Martos, Alexandre A R, Lombardi, Lisa, Jermiin, Lars S, Blanco, Alfonso, Byrne, Kevin P, Wolfe, Kenneth H

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Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser von Fitzpatrick, David A, O'Gaora, Peadar, Byrne, Kevin P, Butler, Geraldine

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Genomic diversity and meiotic recombination among isolates of the biotech yeast Komagataella phaffii (Pichia pastoris) von Braun-Galleani, Stephanie, Dias, Julie A, Coughlan, Aisling Y, Ryan, Adam P, Byrne, Kevin P, Wolfe, Kenneth H

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Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication von Scannell, Devin R, Frank, A. Carolin, Conant, Gavin C, Byrne, Kevin P, Woolfit, Megan, Wolfe, Kenneth H

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The yeast mating-type switching endonuclease HO is a domesticated member of an unorthodox homing genetic element family von Coughlan, Aisling Y., Lombardi, Lisa, Braun-Galleani, Stephanie, Martos, Alexandre A. R., Galeote, Virginie, Bigey, Frederic, Dequin, Sylvie, Byrne, Kevin P., Wolfe, Kenneth H.

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Coverage-Versus-Length Plots, a Simple Quality Control Step for de Novo Yeast Genome Sequence Assemblies von Douglass, Alexander P, O'Brien, Caoimhe E, Offei, Benjamin, Coughlan, Aisling Y, Ortiz-Merino, Raúl A, Butler, Geraldine, Byrne, Kevin P, Wolfe, Kenneth H

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Consistent Patterns of Rate Asymmetry and Gene Loss Indicate Widespread Neofunctionalization of Yeast Genes After Whole-Genome Duplication von Byrne, K.P, Wolfe, K.H

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The CYPome of the model xenobiotic-biotransforming fungus Cunninghamella elegans von Palmer-Brown, William, Miranda-CasoLuengo, Raúl, Wolfe, Kenneth H., Byrne, Kevin P., Murphy, Cormac D.

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