Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters von Javierre, Biola M., Burren, Oliver S., Wilder, Steven P., Kreuzhuber, Roman, Hill, Steven M., Sewitz, Sven, Cairns, Jonathan, Wingett, Steven W., Várnai, Csilla, Thiecke, Michiel J., Burden, Frances, Farrow, Samantha, Cutler, Antony J., Rehnström, Karola, Downes, Kate, Grassi, Luigi, Kostadima, Myrto, Freire-Pritchett, Paula, Wang, Fan, Martens, Joost H., Kim, Bowon, Sharifi, Nilofar, Janssen-Megens, Eva M., Yaspo, Marie-Laure, Linser, Matthias, Kovacsovics, Alexander, Clarke, Laura, Richardson, David, Datta, Avik, Flicek, Paul, Stunnenberg, Hendrik G., Todd, John A., Zerbino, Daniel R., Stegle, Oliver, Ouwehand, Willem H., Frontini, Mattia, Wallace, Chris, Spivakov, Mikhail, Fraser, Peter

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Widespread seasonal gene expression reveals annual differences in human immunity and physiology von Dopico, Xaquin Castro, Evangelou, Marina, Ferreira, Ricardo C., Guo, Hui, Pekalski, Marcin L., Smyth, Deborah J., Cooper, Nicholas, Burren, Oliver S., Fulford, Anthony J., Hennig, Branwen J., Prentice, Andrew M., Ziegler, Anette-G., Bonifacio, Ezio, Wallace, Chris, Todd, John A.

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Approaches and advances in the genetic causes of autoimmune disease and their implications von Inshaw, Jamie R. J., Cutler, Antony J., Burren, Oliver S., Stefana, M. Irina, Todd, John A.

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A Type I Interferon Transcriptional Signature Precedes Autoimmunity in Children Genetically at Risk for Type 1 Diabetes von FERREIRA, Ricardo C, HUI GUO, LYONS, Paul A, SMITH, Kenneth G. C, ACHENBACH, Peter, BEYERLEIN, Andreas, DUNGER, David B, CLAYTON, David G, WICKER, Linda S, TODD, John A, BONIFACIO, Ezio, WALLACE, Chris, COULSON, Richard M. R, ZIEGLER, Anette-G, SMYTH, Deborah J, PEKALSKI, Marcin L, BURREN, Oliver S, CUTLER, Antony J, DOECKE, James D, FLINT, Shaun, MCKINNEY, Eoin F

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Chromosome contacts in activated T cells identify autoimmune disease candidate genes von Burren, Oliver S, Rubio García, Arcadio, Javierre, Biola-Maria, Rainbow, Daniel B, Cairns, Jonathan, Cooper, Nicholas J, Lambourne, John J, Schofield, Ellen, Castro Dopico, Xaquin, Ferreira, Ricardo C, Coulson, Richard, Burden, Frances, Rowlston, Sophia P, Downes, Kate, Wingett, Steven W, Frontini, Mattia, Ouwehand, Willem H, Fraser, Peter, Spivakov, Mikhail, Todd, John A, Wicker, Linda S, Cutler, Antony J, Wallace, Chris

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Fine mapping chromatin contacts in capture Hi-C data von Eijsbouts, Christiaan Q, Burren, Oliver S, Newcombe, Paul J, Wallace, Chris

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Resolving mechanisms of immune‐mediated disease in primary CD4 T cells von Bourges, Christophe, Groff, Abigail F, Burren, Oliver S, Gerhardinger, Chiara, Mattioli, Kaia, Hutchinson, Anna, Hu, Theodore, Anand, Tanmay, Epping, Madeline W, Wallace, Chris, Smith, Kenneth GC, Rinn, John L, Lee, James C

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Author Correction: Approaches and advances in the genetic causes of autoimmune disease and their implications von Inshaw, Jamie R. J., Cutler, Antony J., Burren, Oliver S., Stefana, M. Irina, Todd, John A.

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Prioritisation of Candidate Genes Underpinning COVID-19 Host Genetic Traits Based on High-Resolution 3D Chromosomal Topology von Thiecke, Michiel J., Yang, Emma J., Burren, Oliver S., Ray-Jones, Helen, Spivakov, Mikhail

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Dissection of a Complex Disease Susceptibility Region Using a Bayesian Stochastic Search Approach to Fine Mapping von Wallace, Chris, Cutler, Antony J, Pontikos, Nikolas, Pekalski, Marcin L, Burren, Oliver S, Cooper, Jason D, García, Arcadio Rubio, Ferreira, Ricardo C, Guo, Hui, Walker, Neil M, Smyth, Deborah J, Rich, Stephen S, Onengut-Gumuscu, Suna, Sawcer, Stephen J, Ban, Maria, Richardson, Sylvia, Todd, John A, Wicker, Linda S

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Publisher Correction: Approaches and advances in the genetic causes of autoimmune disease and their implications von Inshaw, Jamie R. J., Cutler, Antony J., Burren, Oliver S., Stefana, M. Irina, Todd, John A.

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A Method for Gene-Based Pathway Analysis Using Genomewide Association Study Summary Statistics Reveals Nine New Type 1 Diabetes Associations von Evangelou, Marina, Smyth, Deborah J., Fortune, Mary D., Burren, Oliver S., Walker, Neil M., Guo, Hui, Onengut-Gumuscu, Suna, Chen, Wei-Min, Concannon, Patrick, Rich, Stephen S., Todd, John A., Wallace, Chris

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Integration of disease association and eQTL data using a Bayesian colocalisation approach highlights six candidate causal genes in immune-mediated diseases von Guo, Hui, Fortune, Mary D, Burren, Oliver S, Schofield, Ellen, Todd, John A, Wallace, Chris

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Prevalence of CFTR variants in primary immunodeficiency patients with bronchiectasis is an important modifying cofactor von Lawless, Dylan, Allen, Hana Lango, Thaventhiran, James E.D., Goddard, Sarah, Burren, Oliver S., Robson, Evie, Peckham, Daniel, Smith, Kenneth G.C., Savic, Sinisa

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VSEAMS: a pipeline for variant set enrichment analysis using summary GWAS data identifies IKZF3, BATF and ESRRA as key transcription factors in type 1 diabetes von Burren, Oliver S, Guo, Hui, Wallace, Chris

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A minimal role for synonymous variation in human disease von Dhindsa, Ryan S., Wang, Quanli, Vitsios, Dimitrios, Burren, Oliver S., Hu, Fengyuan, DiCarlo, James E., Kruglyak, Leonid, MacArthur, Daniel G., Hurles, Matthew E., Petrovski, Slavé

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Disease prediction with multi-omics and biomarkers empowers case–control genetic discoveries in the UK Biobank von Garg, Manik, Karpinski, Marcin, Matelska, Dorota, Middleton, Lawrence, Burren, Oliver S., Hu, Fengyuan, Wheeler, Eleanor, Smith, Katherine R., Fabre, Margarete A., Mitchell, Jonathan, O’Neill, Amanda, Ashley, Euan A., Harper, Andrew R., Wang, Quanli, Dhindsa, Ryan S., Petrovski, Slavé, Vitsios, Dimitrios

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Inherited Variation in Vitamin D Genes Is Associated With Predisposition to Autoimmune Disease Type 1 Diabetes von COOPER, Jason D, SMYTH, Deborah J, SPECTOR, Timothy D, OUWEHAND, Willem H, WANG, Thomas J, BADENHOOP, Klaus, TODD, John A, WALKER, Neil M, STEVENS, Helen, BURREN, Oliver S, WALLACE, Chris, GREISSL, Christopher, RAMOS-LOPEZ, Elizabeth, HYPPÖNEN, Elina, DUNGER, David B

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Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes von Todd, John A, Walker, Neil M, Cooper, Jason D, Smyth, Deborah J, Downes, Kate, Plagnol, Vincent, Bailey, Rebecca, Nejentsev, Sergey, Field, Sarah F, Payne, Felicity, Lowe, Christopher E, Szeszko, Jeffrey S, Hafler, Jason P, Zeitels, Lauren, Yang, Jennie H M, Vella, Adrian, Nutland, Sarah, Stevens, Helen E, Schuilenburg, Helen, Coleman, Gillian, Maisuria, Meeta, Meadows, William, Smink, Luc J, Healy, Barry, Burren, Oliver S, Lam, Alex A C, Ovington, Nigel R, Allen, James, Adlem, Ellen, Leung, Hin-Tak, Wallace, Chris, Howson, Joanna M M, Guja, Cristian, Ionescu-Tîrgovi te, Constantin, Simmonds, Matthew J, Heward, Joanne M, Gough, Stephen C L, Dunger, David B, Wicker, Linda S, Clayton, David G

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Genetic feature engineering enables characterisation of shared risk factors in immune-mediated diseases von Burren, Oliver S., Reales, Guillermo, Wong, Limy, Bowes, John, Lee, James C., Barton, Anne, Lyons, Paul A., Smith, Kenneth G. C., Thomson, Wendy, Kirk, Paul D. W., Wallace, Chris

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