RNA Bind-n-Seq: Quantitative Assessment of the Sequence and Structural Binding Specificity of RNA Binding Proteins von Lambert, Nicole, Robertson, Alex, Jangi, Mohini, McGeary, Sean, Sharp, Phillip A., Burge, Christopher B.

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Widespread Regulation of Translation by Elongation Pausing in Heat Shock von Shalgi, Reut, Hurt, Jessica A., Krykbaeva, Irina, Taipale, Mikko, Lindquist, Susan, Burge, Christopher B.

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Braveheart, a Long Noncoding RNA Required for Cardiovascular Lineage Commitment von Klattenhoff, Carla A., Scheuermann, Johanna C., Surface, Lauren E., Bradley, Robert K., Fields, Paul A., Steinhauser, Matthew L., Ding, Huiming, Butty, Vincent L., Torrey, Lillian, Haas, Simon, Abo, Ryan, Tabebordbar, Mohammadsharif, Lee, Richard T., Burge, Christopher B., Boyer, Laurie A.

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Transcriptional Amplification in Tumor Cells with Elevated c-Myc von Lin, Charles Y., Lovén, Jakob, Rahl, Peter B., Paranal, Ronald M., Burge, Christopher B., Bradner, James E., Lee, Tong Ihn, Young, Richard A.

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Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues von Merkin, Jason, Russell, Caitlin, Chen, Ping, Burge, Christopher B.

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Splicing regulation: from a parts list of regulatory elements to an integrated splicing code von Wang, Zefeng, Burge, Christopher B

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Transcriptome-wide Regulation of Pre-mRNA Splicing and mRNA Localization by Muscleblind Proteins von Wang, Eric T., Cody, Neal A.L., Jog, Sonali, Biancolella, Michela, Wang, Thomas T., Treacy, Daniel J., Luo, Shujun, Schroth, Gary P., Housman, David E., Reddy, Sita, Lécuyer, Eric, Burge, Christopher B.

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Acquisition of a hybrid E/M state is essential for tumorigenicity of basal breast cancer cells von Kröger, Cornelia, Afeyan, Alexander, Mraz, Jasmin, Eaton, Elinor Ng, Reinhardt, Ferenc, Khodor, Yevgenia L., Thiru, Prathapan, Bierie, Brian, Ye, Xin, Burge, Christopher B., Weinberg, Robert A.

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Revisiting Global Gene Expression Analysis von Lovén, Jakob, Orlando, David A., Sigova, Alla A., Lin, Charles Y., Rahl, Peter B., Burge, Christopher B., Levens, David L., Lee, Tong Ihn, Young, Richard A.

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An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data von Ramsköld, Daniel, Wang, Eric T, Burge, Christopher B, Sandberg, Rickard

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Distal Alternative Last Exons Localize mRNAs to Neural Projections von Taliaferro, J. Matthew, Vidaki, Marina, Oliveira, Ruan, Olson, Sara, Zhan, Lijun, Saxena, Tanvi, Wang, Eric T., Graveley, Brenton R., Gertler, Frank B., Swanson, Maurice S., Burge, Christopher B.

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Analysis and design of RNA sequencing experiments for identifying isoform regulation von Katz, Yarden, Wang, Eric T, Airoldi, Edoardo M, Burge, Christopher B

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Most mammalian mRNAs are conserved targets of microRNAs von Friedman, Robin C, Farh, Kyle Kai-How, Burge, Christopher B, Bartel, David P

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Widespread Inhibition of Posttranscriptional Splicing Shapes the Cellular Transcriptome following Heat Shock von Shalgi, Reut, Hurt, Jessica A., Lindquist, Susan, Burge, Christopher B.

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Promoter directionality is controlled by U1 snRNP and polyadenylation signals von Almada, Albert E., Wu, Xuebing, Kriz, Andrea J., Burge, Christopher B., Sharp, Phillip A.

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An EMT-driven alternative splicing program occurs in human breast cancer and modulates cellular phenotype von Shapiro, Irina M, Cheng, Albert W, Flytzanis, Nicholas C, Balsamo, Michele, Condeelis, John S, Oktay, Maja H, Burge, Christopher B, Gertler, Frank B

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3' UTR-isoform choice has limited influence on the stability and translational efficiency of most mRNAs in mouse fibroblasts von Spies, Noah, Burge, Christopher B, Bartel, David P

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Exon-Mediated Activation of Transcription Starts von Fiszbein, Ana, Krick, Keegan S., Begg, Bridget E., Burge, Christopher B.

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Widespread Shortening of 3' Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate Immune Responses to Infection von Pai, Athma A, Baharian, Golshid, Pagé Sabourin, Ariane, Brinkworth, Jessica F, Nédélec, Yohann, Foley, Joseph W, Grenier, Jean-Christophe, Siddle, Katherine J, Dumaine, Anne, Yotova, Vania, Johnson, Zachary P, Lanford, Robert E, Burge, Christopher B, Barreiro, Luis B

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Alternative isoform regulation in human tissue transcriptomes von Wang, Eric T., Sandberg, Rickard, Luo, Shujun, Khrebtukova, Irina, Zhang, Lu, Mayr, Christine, Kingsmore, Stephen F., Schroth, Gary P., Burge, Christopher B.

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