A computational model for controlling conformational cooperativity and function in proteins von Erman, Burak

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Engineering molecular machines von Erman, Burak

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A fast approximate method of identifying paths of allosteric communication in proteins von Erman, Burak

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Information flow and allosteric communication in proteins von Hacisuleyman, Aysima, Erman, Burak

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Entropy Transfer between Residue Pairs and Allostery in Proteins: Quantifying Allosteric Communication in Ubiquitin von Hacisuleyman, Aysima, Erman, Burak

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Binding Mechanism of Neutralizing Nanobodies Targeting SARS-CoV‑2 Spike Glycoprotein von Golcuk, Mert, Hacisuleyman, Aysima, Erman, Burak, Yildiz, Ahmet, Gur, Mert

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ModiBodies: A computational method for modifying nanobodies in nanobody-antigen complexes to improve binding affinity and specificity von Hacisuleyman, Aysima, Erman, Burak

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Mutual information analysis of mutation, nonlinearity, and triple interactions in proteins von Erman, Burak

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Targeting mitochondrial DNA polymerase gamma for selective inhibition of MLH1 deficient colon cancer growth von Somuncu, Berna, Ekmekcioglu, Aysegul, Antmen, Fatma Merve, Ertuzun, Tugce, Deniz, Emre, Keskin, Nazli, Park, Joon, Yazici, Ilgu Ece, Simsek, Busra, Erman, Batu, Yin, Whitney, Erman, Burak, Muftuoglu, Meltem

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Comparative effects of oncogenic mutations G12C, G12V, G13D, and Q61H on local conformations and dynamics of K-Ras von Vatansever, Sezen, Erman, Burak, Gümüş, Zeynep H.

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Diagnostic Transitions from Primary Psychiatric Disorders to Underlying Medical Conditions: A 5-Year Retrospective Survey from a University Hospital Sample von Menkü, Burak Erman, Akın, Serhat, Tamdemir, Sultan Efsun, Genis, Bahadır, Altıparmak, Taylan, Cosar, Behcet

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Identification of ligand binding sites of proteins using the Gaussian Network Model von Tuzmen, Ceren, Erman, Burak

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Dynamically driven correlations in elastic net models reveal sequence of events and causality in proteins von Erkip, Albert, Erman, Burak

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The effects of social media news that users trusted and verified on anxiety level and disease control perception in COVID-19 Pandemic (eng) von Şentürk, Erman, Geniş, Bahadır, Menkü, Burak Erman, Cosar, Behcet

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A Molecular Dynamics Study of Allosteric Transitions in Leishmania mexicana Pyruvate Kinase von Naithani, Ankita, Taylor, Paul, Erman, Burak, Walkinshaw, Malcolm D.

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Gaussian network model revisited: effects of mutation and ligand binding on protein behavior von Erman, Burak

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Synergy and anti-cooperativity in allostery: Molecular dynamics study of WT and oncogenic KRAS-RGL1 von Hacisuleyman, Aysima, Erman, Burak

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Fine tuning rigid body docking results using the Dreiding force field: A computational study of 36 known nanobody-protein complexes von Hacisuleyman, Aysima, Erman, Burak

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Molecular recognition of H3/H4 histone tails by the tudor domains of JMJD2A: a comparative molecular dynamics simulations study von Ozboyaci, Musa, Gursoy, Attila, Erman, Burak, Keskin, Ozlem

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Predicting important residues and interaction pathways in proteins using Gaussian Network Model: binding and stability of HLA proteins von Haliloglu, Turkan, Gul, Ahmet, Erman, Burak

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