AnnapuRNA: A scoring function for predicting RNA-small molecule binding poses von Stefaniak, Filip, Bujnicki, Janusz M.

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DARS-RNP and QUASI-RNP: new statistical potentials for protein-RNA docking von Tuszynska, Irina, Bujnicki, Janusz M

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MODOMICS: a database of RNA modification pathways. 2021 update von Boccaletto, Pietro, Stefaniak, Filip, Ray, Angana, Cappannini, Andrea, Mukherjee, Sunandan, Purta, Elżbieta, Kurkowska, Małgorzata, Shirvanizadeh, Niloofar, Destefanis, Eliana, Groza, Paula, Avşar, Gülben, Romitelli, Antonia, Pir, Pınar, Dassi, Erik, Conticello, Silvestro G, Aguilo, Francesca, Bujnicki, Janusz M

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RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools von Magnus, Marcin, Antczak, Maciej, Zok, Tomasz, Wiedemann, Jakub, Lukasiak, Piotr, Cao, Yang, Bujnicki, Janusz M, Westhof, Eric, Szachniuk, Marta, Miao, Zhichao

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MODOMICS: a database of RNA modification pathways. 2017 update von Boccaletto, Pietro, Machnicka, Magdalena A, Purta, Elzbieta, Piątkowski, Paweł, Bagiński, Błażej, Wirecki, Tomasz K, de Crécy-Lagard, Valérie, Ross, Robert, Limbach, Patrick A, Kotter, Annika, Helm, Mark, Bujnicki, Janusz M

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NPDock: a web server for protein-nucleic acid docking von Tuszynska, Irina, Magnus, Marcin, Jonak, Katarzyna, Dawson, Wayne, Bujnicki, Janusz M

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DNAzymeBuilder, a web application for in situ generation of RNA/DNA-cleaving deoxyribozymes von Mohammadi-Arani, Razieh, Javadi-Zarnaghi, Fatemeh, Boccaletto, Pietro, Bujnicki, Janusz M, Ponce-Salvatierra, Almudena

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Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements von Manfredonia, Ilaria, Nithin, Chandran, Ponce-Salvatierra, Almudena, Ghosh, Pritha, Wirecki, Tomasz K, Marinus, Tycho, Ogando, Natacha S, Snijder, Eric J, van Hemert, Martijn J, Bujnicki, Janusz M, Incarnato, Danny

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Intrinsic disorder in the human spliceosomal proteome von Korneta, Iga, Bujnicki, Janusz M

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Sci-ModoM: a quantitative database of transcriptome-wide high-throughput RNA modification sites von Boileau, Etienne, Wilhelmi, Harald, Busch, Anne, Cappannini, Andrea, Hildebrand, Andreas, Bujnicki, Janusz M, Dieterich, Christoph

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ARTEMIS: a method for topology-independent superposition of RNA 3D structures and structure-based sequence alignment von Bohdan, Davyd R, Bujnicki, Janusz M, Baulin, Eugene F

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MetaMQAP: a meta-server for the quality assessment of protein models von Pawlowski, Marcin, Gajda, Michal J, Matlak, Ryszard, Bujnicki, Janusz M

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MODOMICS: a database of RNA modification pathways--2013 update von Machnicka, Magdalena A, Milanowska, Kaja, Osman Oglou, Okan, Purta, Elzbieta, Kurkowska, Malgorzata, Olchowik, Anna, Januszewski, Witold, Kalinowski, Sebastian, Dunin-Horkawicz, Stanislaw, Rother, Kristian M, Helm, Mark, Bujnicki, Janusz M, Grosjean, Henri

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ModeRNA: a tool for comparative modeling of RNA 3D structure von Rother, Magdalena, Rother, Kristian, Puton, Tomasz, Bujnicki, Janusz M

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MODOMICS: a database of RNA modifications and related information. 2023 update von Cappannini, Andrea, Ray, Angana, Purta, Elżbieta, Mukherjee, Sunandan, Boccaletto, Pietro, Moafinejad, S Naeim, Lechner, Antony, Barchet, Charles, Klaholz, Bruno P, Stefaniak, Filip, Bujnicki, Janusz M

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RNA target highlights in CASP15: Evaluation of predicted models by structure providers von Kretsch, Rachael C., Andersen, Ebbe S., Bujnicki, Janusz M., Chiu, Wah, Das, Rhiju, Luo, Bingnan, Masquida, Benoît, McRae, Ewan K. S., Schroeder, Griffin M., Su, Zhaoming, Wedekind, Joseph E., Xu, Lily, Zhang, Kaiming, Zheludev, Ivan N., Moult, John, Kryshtafovych, Andriy

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DEGRONOPEDIA: a web server for proteome-wide inspection of degrons von Szulc, Natalia A, Stefaniak, Filip, Piechota, Małgorzata, Soszyńska, Anna, Piórkowska, Gabriela, Cappannini, Andrea, Bujnicki, Janusz M, Maniaci, Chiara, Pokrzywa, Wojciech

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SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction von Boniecki, Michal J, Lach, Grzegorz, Dawson, Wayne K, Tomala, Konrad, Lukasz, Pawel, Soltysinski, Tomasz, Rother, Kristian M, Bujnicki, Janusz M

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RNA 3D structure modeling by fragment assembly with small-angle X-ray scattering restraints von Chojnowski, Grzegorz, Zaborowski, Rafał, Magnus, Marcin, Mukherjee, Sunandan, Bujnicki, Janusz M

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NAIRDB: a database of Fourier transform infrared (FTIR) data for nucleic acids von Balduzzi, Elsa, Geinguenaud, Frédéric, Sordyl, Dominik, Maiti, Satyabrata, Farsani, Masoud Amiri, Nikolaev, Grigory, Arluison, Véronique, Bujnicki, Janusz M

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