High Levels of Acquired HIV Drug Resistance Following Virological Nonsuppression in HIV-Infected Women from a High-Risk Cohort in Uganda von Segujja, Farouk, Omooja, Jonah, Lunkuse, Sandra, Nanyonjo, Maria, Nabirye, Stella E, Nassolo, Faridah, Bugembe, Daniel L, Bbosa, Nicholas, Kateete, David P, Ssenyonga, William, Mayanja, Yunia, Nsubuga, Rebecca N, Seeley, Janet, Kaleebu, Pontiano, Ssemwanga, Deogratius

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Spike Protein Cleavage-Activation in the Context of the SARS-CoV-2 P681R Mutation: an Analysis from Its First Appearance in Lineage A.23.1 Identified in Uganda von Lubinski, Bailey, Frazier, Laura E, Phan, My V T, Bugembe, Daniel L, Cunningham, Jessie L, Tang, Tiffany, Daniel, Susan, Cotten, Matthew, Jaimes, Javier A, Whittaker, Gary R

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Emergence and spread of a SARS-CoV-2 lineage A variant (A.23.1) with altered spike protein in Uganda von Bugembe, Daniel Lule, Phan, My V. T., Ssewanyana, Isaac, Semanda, Patrick, Nansumba, Hellen, Dhaala, Beatrice, Nabadda, Susan, O’Toole, Áine Niamh, Rambaut, Andrew, Kaleebu, Pontiano, Cotten, Matthew

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Comprehensive Modeling of Vacuum Systems Using Process Simulation Software von Osipov, Eduard Vladislavovich, Bugembe, Daniel, Ponikarov, Sergey Ivanovich, Ponikarov, Artem Sergeevich

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HIVseqDB: a portable resource for NGS and sample metadata integration for HIV-1 drug resistance analysis von Ssekagiri, Alfred, Jjingo, Daudi, Bbosa, Nicholas, Bugembe, Daniel L, Kateete, David P, Jordan, I King, Kaleebu, Pontiano, Ssemwanga, Deogratius

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A study of flow characteristics in a low-pressure ejector installation von Varsegova, Evgenia, Osipova, Lilia, Bugembe, Daniel

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Main Routes of Entry and Genomic Diversity of SARS-CoV-2, Uganda von Bugembe, Daniel Lule, Kayiwa, John, Phan, My V T, Tushabe, Phiona, Balinandi, Stephen, Dhaala, Beatrice, Lexow, Jonas, Mwebesa, Henry, Aceng, Jane, Kyobe, Henry, Ssemwanga, Deogratius, Lutwama, Julius, Kaleebu, Pontiano, Cotten, Matthew

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Computational MHC-I epitope predictor identifies 95% of experimentally mapped HIV-1 clade A and D epitopes in a Ugandan cohort von Bugembe, Daniel Lule, Ekii, Andrew Obuku, Ndembi, Nicaise, Serwanga, Jennifer, Kaleebu, Pontiano, Pala, Pietro

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Next-Generation Sequencing Reveals a High Frequency of HIV-1 Minority Variants and an Expanded Drug Resistance Profile among Individuals on First-Line ART von Nannyonjo, Maria, Omooja, Jonah, Bugembe, Daniel Lule, Bbosa, Nicholas, Lunkuse, Sandra, Nabirye, Stella Esther, Nassolo, Faridah, Namagembe, Hamidah, Abaasa, Andrew, Kazibwe, Anne, Kaleebu, Pontiano, Ssemwanga, Deogratius

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Macrophage Inflammatory Protein-1 Beta and Interferon Gamma Responses in Ugandans with HIV-1 Acute/Early Infections von Obuku, Andrew Ekii, Bugembe, Daniel L, Musinguzi, Kenneth, Watera, Christine, Serwanga, Jennifer, Ndembi, Nicaise, Levin, Jonathan, Kaleebu, Pontiano, Pala, Pietro

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SARS-CoV-2 Variants, South Sudan, January-March 2021 von Bugembe, Daniel Lule, Phan, My V T, Abias, Abe G, Ayei, James, Deng, Lul Lojok, Lako, Richard Lino Loro, Rumunu, John, Kaleebu, Pontiano, Wamala, Joseph Francis, Hm, Juma John, Lodiongo, Dennis Kenyi, Bunga, Sudhir, Cotten, Matthew

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QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data von Ssekagiri, Alfred, Jjingo, Daudi, Lujumba, Ibra, Bbosa, Nicholas, Bugembe, Daniel L, Kateete, David P, Jordan, I King, Kaleebu, Pontiano, Ssemwanga, Deogratius

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A methodology of coupled modeling of vacuum blocks of industrial installations von Osipov, Eduard, Telyakov, Eduard, Ponikarov, Sergey, Bugembe, Daniel, Ponikarov, Artem

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Next-Generation Sequencing Reveals a High Frequency of HIV-1 Minority Variants and an Expanded Drug Resistance Profile among Individuals on First-Line ART von Nannyonjo, Maria, Omooja, Jonah, Bugembe, Daniel Lule, Bbosa, Nicholas, Lunkuse, Sandra, Nabirye, Stella Esther, Nassolo, Faridah, Namagembe, Hamidah, Abaasa, Andrew, Kazibwe, Anne, Kaleebu, Pontiano, Ssemwanga, Deogratius

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Mini-Refinery Vacuum Unit: Functional Analysis and Improvement of Vacuum Overhead System von Osipov, Eduard, Telyakov, Eduard, Ponikarov, Sergey, Bugembe, Daniel, Ponikarov, Artem

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Computational MHC-I epitope predictor identifies 95% of experimentally mapped HIV-1 clade A and D epitopes in a Ugandan cohort von Bugembe, Daniel Lule, Ekii, Andrew Obuku, Ndembi, Nicaise, Serwanga, Jennifer, Kaleebu, Pontiano, Pala, Pietro

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SARS-CoV-2 Variants, South Sudan, January-March 2021 von Bugembe, Daniel Lule, Phan, My VT, Abias, Abe G, Ayei, James, Deng, Lul Lojok, Lako, Richard Lino Loro, Rumunu, John, Kaleebu, Pontiano, Wamala, Joseph Francis, Hm, Juma John, Lodiongo, Dennis Kenyi, Bunga, Sudhir, Cotten, Matthew

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Main Routes of Entry and Genomic Diversity of SARS-CoV-2, Uganda von Bugembe, Daniel Lule, Kayiwa, John, Phan, My VT, Tushabe, Phiona, Balinandi, Stephen, Dhaala, Beatrice, Lexow, Jonas, Mwebesa, Henry, Aceng, Jane, Kyobe, Henry, Ssemwanga, Deogratius, Lutwama, Julius, Kaleebu, Pontiano, Cotten, Matthew

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High Levels of Acquired HIV Drug Resistance Following Virological Nonsuppression in HIV-Infected Women from a High-Risk Cohort in Uganda von Segujja, Farouk, Omooja, Jonah, Lunkuse, Sandra, Nanyonjo, Maria, Nabirye, Stella E, Nassolo, Faridah, Bugembe, Daniel L, Bbosa, Nicholas, Kateete, David P, Ssenyonga, William, Mayanja, Yunia, Nsubuga, Rebecca N, Seeley, Janet, Kaleebu, Pontiano, Ssemwanga, Deogratius

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QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data von Ssekagiri, Alfred, Jjingo, Daudi, Lujumba, Ibra, Bbosa, Nicholas, Bugembe, Daniel L, Kateete, David P, Jordan, I King, Kaleebu, Pontiano, Ssemwanga, Deogratius

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