Full scale structural, mechanical and dynamical properties of HIV-1 liposomes von Bryer, Alexander J, Reddy, Tyler, Lyman, Edward, Perilla, Juan R

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Atomic-resolution structure of HIV-1 capsid tubes by magic-angle spinning NMR von Lu, Manman, Russell, Ryan W., Bryer, Alexander J., Quinn, Caitlin M., Hou, Guangjin, Zhang, Huilan, Schwieters, Charles D., Perilla, Juan R., Gronenborn, Angela M., Polenova, Tatyana

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Performance efficient macromolecular mechanics via sub-nanometer shape based coarse graining von Bryer, Alexander J., Rey, Juan S., Perilla, Juan R.

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Multidisciplinary studies with mutated HIV-1 capsid proteins reveal structural mechanisms of lattice stabilization von Gres, Anna T., Kirby, Karen A., McFadden, William M., Du, Haijuan, Liu, Dandan, Xu, Chaoyi, Bryer, Alexander J., Perilla, Juan R., Shi, Jiong, Aiken, Christopher, Fu, Xiaofeng, Zhang, Peijun, Francis, Ashwanth C., Melikyan, Gregory B., Sarafianos, Stefan G.

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Structural basis for the homotypic fusion of chlamydial inclusions by the SNARE-like protein IncA von Cingolani, Gino, McCauley, Michael, Lobley, Anna, Bryer, Alexander J., Wesolowski, Jordan, Greco, Deanna L., Lokareddy, Ravi K., Ronzone, Erik, Perilla, Juan R., Paumet, Fabienne

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Curvature of the Retroviral Capsid Assembly Is Modulated by a Molecular Switch von Thames, Tyrone, Bryer, Alexander J, Qiao, Xin, Jeon, Jaekyun, Weed, Ryan, Janicki, Kaylie, Hu, Bingwen, Gor’kov, Peter L, Hung, Ivan, Gan, Zhehong, Perilla, Juan R, Chen, Bo

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Accelerating prediction of chemical shift of protein structures on GPUs: Using OpenACC von Wright, Eric, Ferrato, Mauricio H, Bryer, Alexander J, Searles, Robert, Perilla, Juan R, Chandrasekaran, Sunita

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Deep-learning in situ classification of HIV-1 virion morphology von Rey, Juan S., Li, Wen, Bryer, Alexander J., Beatson, Hagan, Lantz, Christian, Engelman, Alan N., Perilla, Juan R.

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Elasticity of the HIV-1 core facilitates nuclear entry and infection von Deshpande, Akshay, Bryer, Alexander J, Andino-Moncada, Jonathan R, Shi, Jiong, Hong, Jun, Torres, Cameron, Harel, Shimon, Francis, Ashwanth C, Perilla, Juan R, Aiken, Christopher, Rousso, Itay

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Recognition of the TDP-43 nuclear localization signal by importin α1/β von Doll, Steven G, Meshkin, Hamed, Bryer, Alexander J, Li, Fenglin, Ko, Ying-Hui, Lokareddy, Ravi K, Gillilan, Richard E, Gupta, Kushol, Perilla, Juan R, Cingolani, Gino

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High-Performance Analysis of Biomolecular Containers to Measure Small-Molecule Transport, Transbilayer Lipid Diffusion, and Protein Cavities von Bryer, Alexander J, Hadden-Perilla, Jodi A, Stone, John E, Perilla, Juan R

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Molecular dynamics of the viral life cycle: progress and prospects von Jones, Peter Eugene, Pérez-Segura, Carolina, Bryer, Alexander J, Perilla, Juan R, Hadden-Perilla, Jodi A

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Microtiter binding assays and in silico kinetic mapping reveal binding of TDP-43 nuclear localization signal to importin α is modulated by phosphorylation von Meshkin, Hamed, Bryer, Alexander J., Doll, Steven G., Cingolani, Gino, Perilla, Juan R.

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Exploring the Mechanism of Action of Membrane Fusion Protein IncA Using Molecular Dynamics Simulations von Greco, Deanna L., Bryer, Alexander J., Perilla, Juan R.

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High-Throughput Refinement of CryoEM-Based Structures von Xu, Chaoyi, Bryer, Alexander J., Perilla, Juan R.

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Full scale structural, mechanical and dynamical properties of HIV-1 liposomes von Bryer, Alexander J., Reddy, Tyler, Lyman, Edward, Perilla, Juan R., Schlessinger, ed., Avner

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Deep-learning in-situ classification of HIV-1 virion morphology von Rey, Juan S., Li, Wen, Bryer, Alexander J., Beatson, Hagan, Lantz, Christian, Engelman, Alan, Perilla, Juan R.

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Accelerating prediction of chemical shift of protein structures on GPUs: Using OpenACC von Wright, Eric, Ferrato, Mauricio H., Bryer, Alexander J., Searles, Robert, Perilla, Juan R., Chandrasekaran, Sunita

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The Pentamer vs Hexamer Assembly of Retroviral Capsid Protein is Controlled by the Flexible Linker von Chen, Bo, Qiao, Xin, Thames, Tyrone, Bryer, Alexander J., Jeon, Jaekyun, Hung, Ivan, Gorkov, Peter, Gan, Zhehong, Perilla, Juan R.

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Large scale all-atom molecular dynamics simulations of mutant CA tubes provide insights on cytotoxic T-lymphocyte-mediated HIV-1 restriction von Bryer, Alexander J., Balasubramaniam, Muthukumar, Thapa, Santosh, Davids, Benem-Orom, Xu, Chaoyi, Shi, Jiong, Aiken, Christopher, Pandhare, Jui, Dash, Chandravanu, Perilla, Juan R.

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