Performance of a divergence time estimation method under a probabilistic model of rate evolution von Kishino, H, Thorne, J L, Bruno, W J

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Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction von Bruno, W J, Socci, N D, Halpern, A L

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Polymorphisms in the Nine Polymorphic Membrane Proteins of Chlamydia trachomatis across All Serovars: Evidence for Serovar Da Recombination and Correlation with Tissue Tropism von GOMES, Joao P, NUNES, Alexandra, BRUNO, William J, BORREGO, Maria J, FLORINDO, Carlos, DEAN, Deborah

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Evolutionary HMMs: a Bayesian approach to multiple alignment von Holmes, Ian, Bruno, William J.

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Using Independent Open-to-Closed Transitions to Simplify Aggregated Markov Models of Ion Channel Gating Kinetics von Bruno, William J., Yang, Jin, Pearson, John E., Swinney, Harry L.

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Evolutionary distances for protein-coding sequences: modeling site-specific residue frequencies von Halpern, A L, Bruno, W J

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Recombination in the Genome of Chlamydia trachomatis Involving the Polymorphic Membrane Protein C Gene Relative to ompA and Evidence for Horizontal Gene Transfer von GOMES, Joao P, BRUNO, William J, BORREGO, Maria J, DEAN, Deborah

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The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise von Dutilh, Bas E, Huynen, Martijn A, Bruno, William J, Snel, Berend

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Topological bias and inconsistency of maximum likelihood using wrong models von Bruno, W J, Halpern, A L

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Assessing an unknown evolutionary process: effect of increasing site-specific knowledge through taxon addition von Pollock, D D, Bruno, W J

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Modeling residue usage in aligned protein sequences via maximum likelihood von Bruno, W J

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Predicting Phenotype and Emerging Strains among Chlamydia trachomatis Infections von Dean, D, Bruno, WJ, Wan, R, Gomes, JP, Devignot, S, Mehari, T, De Vries, HJC, Morre, SA, Myers, G, Read, TD, Spratt, BG

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Vibrationally enhanced tunneling as a mechanism for enzymatic hydrogen transfer von Bruno, W.J., Bialek, W.

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Weighted Pseudo-distances for Categorization in Semantic Hierarchies von Joslyn, Cliff A., Bruno, William J.

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Efficient pooling designs for library screening von Bruno, W.J., Knill, E., Balding, D.J., Bruce, D.C., Doggett, N.A., Sawhill, W.W., Stallings, R.L., Whittaker, C.C., Torney, D.C.

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Estimation of reversible substitution matrices from multiple pairs of sequences von Arvestad, L, Bruno, W J

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An integrated physical map of human chromosome 16 von Doggett, N A, Goodwin, L A, Tesmer, J G, Meincke, L J, Bruce, D C, Clark, L M, Altherr, M R, Ford, A A, Chi, H C, Marrone, B L

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Non-adaptive group testing in the presence of errors von Knill, E., Bruno, W.J., Torney, D.C.

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Optimizing Nonadaptive Group Tests for Objects with Heterogeneous Priors von Bruno, W. J., Sun, F., Torney, D. C.

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Asymptotics of pooling design performance von Percus, J. K., Percus, O. E., Bruno, W. J., Torney, D. C.

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