The Human Microbiome Project: a community resource for the healthy human microbiome von Gevers, Dirk, Knight, Rob, Petrosino, Joseph F, Huang, Katherine, McGuire, Amy L, Birren, Bruce W, Nelson, Karen E, White, Owen, Methé, Barbara A, Huttenhower, Curtis

Volltext

Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters von Cimermancic, Peter, Medema, Marnix H., Claesen, Jan, Kurita, Kenji, Wieland Brown, Laura C., Mavrommatis, Konstantinos, Pati, Amrita, Godfrey, Paul A., Koehrsen, Michael, Clardy, Jon, Birren, Bruce W., Takano, Eriko, Sali, Andrej, Linington, Roger G., Fischbach, Michael A.

Volltext

How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes? von Haas, Brian J, Chin, Melissa, Nusbaum, Chad, Birren, Bruce W, Livny, Jonathan

Volltext

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons von Haas, Brian J, Gevers, Dirk, Earl, Ashlee M, Feldgarden, Mike, Ward, Doyle V, Giannoukos, Georgia, Ciulla, Dawn, Tabbaa, Diana, Highlander, Sarah K, Sodergren, Erica, Methé, Barbara, DeSantis, Todd Z, Petrosino, Joseph F, Knight, Rob, Birren, Bruce W

Volltext

Full-length transcriptome assembly from RNA-Seq data without a reference genome von Grabherr, Manfred G, Haas, Brian J, Yassour, Moran, Levin, Joshua Z, Thompson, Dawn A, Amit, Ido, Adiconis, Xian, Fan, Lin, Raychowdhury, Raktima, Zeng, Qiandong, Chen, Zehua, Mauceli, Evan, Hacohen, Nir, Gnirke, Andreas, Rhind, Nicholas, di Palma, Federica, Birren, Bruce W, Nusbaum, Chad, Lindblad-Toh, Kerstin, Friedman, Nir, Regev, Aviv

Volltext

Whole genome amplification and de novo assembly of single bacterial cells von Rodrigue, Sébastien, Malmstrom, Rex R, Berlin, Aaron M, Birren, Bruce W, Henn, Matthew R, Chisholm, Sallie W

Volltext

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae von Kellis, Manolis, Birren, Bruce W., Lander, Eric S.

Volltext

Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance von Cerqueira, Gustavo C, Cheeseman, Ian H, Schaffner, Steve F, Nair, Shalini, McDew-White, Marina, Phyo, Aung Pyae, Ashley, Elizabeth A, Melnikov, Alexandre, Rogov, Peter, Birren, Bruce W, Nosten, François, Anderson, Timothy J C, Neafsey, Daniel E

Volltext

Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes von Yassour, Moran, Lim, Mi Young, Yun, Hyun Sun, Tickle, Timothy L, Sung, Joohon, Song, Yun-Mi, Lee, Kayoung, Franzosa, Eric A, Morgan, Xochitl C, Gevers, Dirk, Lander, Eric S, Xavier, Ramnik J, Birren, Bruce W, Ko, GwangPyo, Huttenhower, Curtis

Volltext

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes von Giannoukos, Georgia, Ciulla, Dawn M, Huang, Katherine, Haas, Brian J, Izard, Jacques, Levin, Joshua Z, Livny, Jonathan, Earl, Ashlee M, Gevers, Dirk, Ward, Doyle V, Nusbaum, Chad, Birren, Bruce W, Gnirke, Andreas

Volltext

The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum von Neafsey, Daniel E, Galinsky, Kevin, Jiang, Rays H Y, Young, Lauren, Sykes, Sean M, Saif, Sakina, Gujja, Sharvari, Goldberg, Jonathan M, Young, Sarah, Zeng, Qiandong, Chapman, Sinéad B, Dash, Aditya P, Anvikar, Anupkumar R, Sutton, Patrick L, Birren, Bruce W, Escalante, Ananias A, Barnwell, John W, Carlton, Jane M

Volltext

Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development von Holder, Jason W, Ulrich, Jil C, DeBono, Anthony C, Godfrey, Paul A, Desjardins, Christopher A, Zucker, Jeremy, Zeng, Qiandong, Leach, Alex L B, Ghiviriga, Ion, Dancel, Christine, Abeel, Thomas, Gevers, Dirk, Kodira, Chinnappa D, Desany, Brian, Affourtit, Jason P, Birren, Bruce W, Sinskey, Anthony J

Volltext

Genomics of Loa loa, a Wolbachia-free filarial parasite of humans von Desjardins, Christopher A, Cerqueira, Gustavo C, Goldberg, Jonathan M, Hotopp, Julie C Dunning, Haas, Brian J, Zucker, Jeremy, Ribeiro, José M C, Saif, Sakina, Levin, Joshua Z, Fan, Lin, Zeng, Qiandong, Russ, Carsten, Wortman, Jennifer R, Fink, Doran L, Birren, Bruce W, Nutman, Thomas B

Volltext

Emergence of the Asian 1 genotype of dengue virus serotype 2 in viet nam: in vivo fitness advantage and lineage replacement in South-East Asia von Vu, Thi Ty Hang, Holmes, Edward C, Duong, Veasna, Nguyen, Thien Quy, Tran, Tinh Hien, Quail, Michael, Churcher, Carol, Parkhill, Julian, Cardosa, Jane, Farrar, Jeremy, Wills, Bridget, Lennon, Niall J, Birren, Bruce W, Buchy, Philippe, Henn, Matthew R, Simmons, Cameron P

Volltext

The "most wanted" taxa from the human microbiome for whole genome sequencing von Fodor, Anthony A, DeSantis, Todd Z, Wylie, Kristine M, Badger, Jonathan H, Ye, Yuzhen, Hepburn, Theresa, Hu, Ping, Sodergren, Erica, Liolios, Konstantinos, Huot-Creasy, Heather, Birren, Bruce W, Earl, Ashlee M

Volltext

Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence data von Macalalad, Alexander R, Zody, Michael C, Charlebois, Patrick, Lennon, Niall J, Newman, Ruchi M, Malboeuf, Christine M, Ryan, Elizabeth M, Boutwell, Christian L, Power, Karen A, Brackney, Doug E, Pesko, Kendra N, Levin, Joshua Z, Ebel, Gregory D, Allen, Todd M, Birren, Bruce W, Henn, Matthew R

Volltext

Evolutionary dynamics of the accessory genome of Listeria monocytogenes von den Bakker, Henk C, Desjardins, Christopher A, Griggs, Allison D, Peters, Joseph E, Zeng, Qiandong, Young, Sarah K, Kodira, Chinnappa D, Yandava, Chandri, Hepburn, Theresa A, Haas, Brian J, Birren, Bruce W, Wiedmann, Martin

Volltext

Dothideomycete-Plant Interactions Illuminated by Genome Sequencing and EST Analysis of the Wheat Pathogen Stagonospora nodorum von Hane, James K, Lowe, Rohan G.T, Solomon, Peter S, Tan, Kar-Chun, Schoch, Conrad L, Spatafora, Joseph W, Crous, Pedro W, Kodira, Chinappa, Birren, Bruce W, Galagan, James E, Torriani, Stefano F.F, McDonald, Bruce A, Oliver, Richard P

Volltext

Short-term genome evolution of Listeria monocytogenes in a non-controlled environment von Orsi, Renato H, Borowsky, Mark L, Lauer, Peter, Young, Sarah K, Nusbaum, Chad, Galagan, James E, Birren, Bruce W, Ivy, Reid A, Sun, Qi, Graves, Lewis M, Swaminathan, Bala, Wiedmann, Martin

Volltext

Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission von Raghwani, Jayna, Rambaut, Andrew, Holmes, Edward C, Hang, Vu Ty, Hien, Tran Tinh, Farrar, Jeremy, Wills, Bridget, Lennon, Niall J, Birren, Bruce W, Henn, Matthew R, Simmons, Cameron P

Volltext