Protein Engineering of Antibody Binding Sites: Recovery of Specific Activity in an Anti-Digoxin Single-Chain Fv Analogue Produced in Escherichia coli von Huston, James S., Levinson, Douglas, Mudgett-Hunter, Meredith, Tai, Mei-Sheng, Novotný, Jiří, Margolies, Michael N., Ridge, Richard J., Bruccoleri, Robert E., Haber, Edgar, Crea, Roberto, Oppermann, Hermann

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On the attribution of binding energy in antigen-antibody complexes McPC 603, D1.3, and HyHEL-5 von Novotny, Jiri, Bruccoleri, Robert E, Saul, Frederick A

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Conformational sampling using high-temperature molecular dynamics von Bruccoleri, Robert E., Karplus, Martin

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Prediction of the folding of short polypeptide segments by uniform conformational sampling von Bruccoleri, Robert E., Karplus, Martin

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Antigenic Determinants in Proteins Coincide with Surface Regions Accessible to Large Probes (Antibody Domains) von Novotný, Jir̆í, Handschumacher, Mark, Haber, Edgar, Bruccoleri, Robert E., Carlson, William B., Fanning, David W., Smith, John A., Rose, George D.

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Structure of antibody hypervariable loops reproduced by a conformational search algorithm von Bruccoleri, Robert E, Haber, Edgar, Novotný, Ji í

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Criteria that discriminate between native proteins and incorrectly folded models von Novotný, Jiři, Rashin, A. A., Bruccoleri, R. E.

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Homology modeling using simulated annealing of restrained molecular dynamics and conformational search calculations with CONGEN: Application in predicting the three‐dimensional str... von Li, Haicheng, Tejero, Roberto, Monleon, Daniel, Bassolino‐Klimas, Donna, Abate‐Shen, Cory, Bruccoleri, Robert E., Montelione, Gaetano T.

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Concordance analysis of microbial genomes von Bruccoleri, Robert E., Dougherty, Thomas J., Davison, Daniel B.

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Simulated annealing with restrained molecular dynamics using CONGEN: Energy refinement of the NMR solution structures of epidermal and type‐α transforming growth factors von Tejero, Roberto, Bassolino‐Klimas, Donna, Bruccoleri, Robert E., Montelione, Gaetano T.

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Empirical free energy calculations: a blind test and further improvements to the method von Novotny, J, Bruccoleri, R E, Davis, M, Sharp, K A

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Heavy chain position 50 is a determinant of affinity and specificity for the anti-digoxin antibody 26-10 von SCHILDBACH, J. F, NEAR, R. I, BRUCCOLERI, R. E, HABER, E, JEFFREY, P. D, SHI-CHUNG NG, NOVOTNY, J, SHERIFF, S, MARGOLIES, M. N

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Simulated annealing with restrained molecular dynamics using a flexible restraint potential: Theory and evaluation with simulated NMR constraints von Bassolino‐Klimas, Donna, Tejero, Roberto, Krystek, Stanley R., Metzler, William J., Montelione, Gaetano T., Bruccoleri, Robert E.

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An improved algorithm for nucleic acid secondary structure display von Bruccoleri, Robert E., Heinrich, Gerhard

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Application of a directed conformational search for generating 3-D coordinates for protein structures from α-carbon coordinates von Bassolino-Klimas, Donna, Bruccoleri, Robert E.

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Correlation among sites of limited proteolysis, enzyme accessibility and segmental mobility von Novotný, Jiří, Bruccoleri, Robert E.

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Structure-function studies of the herpes simplex virus type 1 DNA polymerase von HAFFEY, M. L, NOVOTNY, J, BRUCCOLERI, R. E, CARROLL, R. D, STEVENS, J. T, MATTHEWS, J. T

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Altered hapten recognition by two anti-digoxin hybridoma variants due to variable region point mutations von SCHILDBACH, J. F, PANKA, D. J, PARKS, D. R, JAGER, G. C, NOVOTNY, J, HERZENBERG, L. A, MUDGETT-HUNTER, M, BRUCCOLERI, R. E, HABER, E, MARGOLIES, M. N

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CHARMM: A program for macromolecular energy, minimization, and dynamics calculations von Brooks, Bernard R., Bruccoleri, Robert E., Olafson, Barry D., States, David J., Swaminathan, S., Karplus, Martin

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Solution conformation of a cyclic pentapeptide endothelin antagonist Comparison of structures obtained from constrained dynamics and conformational search von Krystek, Stanley R., Bassolino, Donna A., Bruccoleri, Robert E., Hunt, John T., Porubcan, Michael A., Wandler, Charles F., Andersen, Niels H.

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