Illuminating the dark side of the human transcriptome with long read transcript sequencing von Kuo, Richard I., Cheng, Yuanyuan, Zhang, Runxuan, Brown, John W. S., Smith, Jacqueline, Archibald, Alan L., Burt, David W.

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A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing von Zhang, Runxuan, Calixto, Cristiane P G, Marquez, Yamile, Venhuizen, Peter, Tzioutziou, Nikoleta A, Guo, Wenbin, Spensley, Mark, Entizne, Juan Carlos, Lewandowska, Dominika, Ten Have, Sara, Frei Dit Frey, Nicolas, Hirt, Heribert, James, Allan B, Nimmo, Hugh G, Barta, Andrea, Kalyna, Maria, Brown, John W S

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Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis von Kalyna, Maria, Simpson, Craig G, Syed, Naeem H, Lewandowska, Dominika, Marquez, Yamile, Kusenda, Branislav, Marshall, Jacqueline, Fuller, John, Cardle, Linda, McNicol, Jim, Dinh, Huy Q, Barta, Andrea, Brown, John W S

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A methyl transferase links the circadian clock to the regulation of alternative splicing von Yanovsky, Marcelo J, Sanchez, Sabrina E, Petrillo, Ezequiel, Beckwith, Esteban J, Zhang, Xu, Rugnone, Matias L, Hernando, C. Esteban, Cuevas, Juan C, Godoy Herz, Micaela A, Depetris-Chauvin, Ana, Simpson, Craig G, Brown, John W. S, Cerdán, Pablo D, Borevitz, Justin O, Mas, Paloma, Ceriani, M. Fernanda, Kornblihtt, Alberto R

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Alternative Splicing of Barley Clock Genes in Response to Low Temperature von Calixto, Cristiane P G, Simpson, Craig G, Waugh, Robbie, Brown, John W S

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BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq von Rapazote-Flores, Paulo, Bayer, Micha, Milne, Linda, Mayer, Claus-Dieter, Fuller, John, Guo, Wenbin, Hedley, Pete E, Morris, Jenny, Halpin, Claire, Kam, Jason, McKim, Sarah M, Zwirek, Monika, Casao, M Cristina, Barakate, Abdellah, Schreiber, Miriam, Stephen, Gordon, Zhang, Runxuan, Brown, John W S, Waugh, Robbie, Simpson, Craig G

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spliceosome assembly factor GEMIN2 attenuates the effects of temperature on alternative splicing and circadian rhythms von Schlaen, Rubén Gustavo, Estefanéía Mancini, Sabrina Elena Sanchez, Soledad Perez-Santéíángelo, Matéíáías L. Rugnone, Craig G. Simpson, John W. S. Brown, Xu Zhang, Ariel Chernomoretz, Marcelo J. Yanovsky

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Evolutionary Relationships Among Barley and Arabidopsis Core Circadian Clock and Clock-Associated Genes von Calixto, Cristiane P. G., Waugh, Robbie, Brown, John W. S.

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Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts von Simpson, Craig G, Fuller, John, Maronova, Monika, Kalyna, Maria, Davidson, Diane, McNicol, Jim, Barta, Andrea, Brown, John W.S

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Alternative splicing in plants – coming of age von Syed, Naeem H, Kalyna, Maria, Marquez, Yamile, Barta, Andrea, Brown, John W.S

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AtRTD – a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana von Zhang, Runxuan, Calixto, Cristiane P. G., Tzioutziou, Nikoleta A., James, Allan B., Simpson, Craig G., Guo, Wenbin, Marquez, Yamile, Kalyna, Maria, Patro, Rob, Eyras, Eduardo, Barta, Andrea, Nimmo, Hugh G., Brown, John W. S.

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High-quality reference transcript datasets hold the key to transcript-specific RNA-sequencing analysis in plants von Brown, John W. S., Calixto, Cristiane P. G., Zhang, Runxuan

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Plant SILAC: stable-isotope labelling with amino acids of arabidopsis seedlings for quantitative proteomics von Lewandowska, Dominika, ten Have, Sara, Hodge, Kelly, Tillemans, Vinciane, Lamond, Angus I, Brown, John W S

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Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis von Marquez, Yamile, Brown, John W S, Simpson, Craig, Barta, Andrea, Kalyna, Maria

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Arabidopsis PTB1 and PTB2 proteins negatively regulate splicing of a mini‐exon splicing reporter and affect alternative splicing of endogenous genes differentially von Simpson, Craig G, Lewandowska, Dominika, Liney, Michele, Davidson, Diane, Chapman, Sean, Fuller, John, McNicol, Jim, Shaw, Paul, Brown, John W. S

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Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions von Pendle, Alison F, Clark, Gillian P, Boon, Reinier, Lewandowska, Dominika, Lam, Yun Wah, Andersen, Jens, Mann, Matthias, Lamond, Angus I, Brown, John W S, Shaw, Peter J

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Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana von Raczynska, Katarzyna Dorota, Simpson, Craig G, Ciesiolka, Adam, Szewc, Lukasz, Lewandowska, Dominika, McNicol, Jim, Szweykowska-Kulinska, Zofia, Brown, John W S, Jarmolowski, Artur

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Interaction of a Plant Virus-Encoded Protein with the Major Nucleolar Protein Fibrillarin Is Required for Systemic Virus Infection von Kim, Sang Hyon, MacFarlane, Stuart, Kalinina, Natalia O., Rakitina, Daria V., Ryabov, Eugene V., Gillespie, Trudi, Haupt, Sophie, Brown, John W. S., Taliansky, Michael

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Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome von Calixto, Cristiane P.G., Guo, Wenbin, James, Allan B., Tzioutziou, Nikoleta A., Entizne, Juan Carlos, Panter, Paige E., Knight, Heather, Nimmo, Hugh G., Zhang, Runxuan, Brown, John W.S.

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Cajal bodies and the nucleolus are required for a plant virus systemic infection von Kim, Sang Hyon, Ryabov, Eugene V, Kalinina, Natalia O, Rakitina, Daria V, Gillespie, Trudi, MacFarlane, Stuart, Haupt, Sophie, Brown, John WS, Taliansky, Michael

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