Strain-dependent diversity in the Pseudomonas aeruginosa quorum-sensing regulon von Chugani, Sudha, Kim, Byoung Sik, Phattarasukol, Somsak, Brittnacher, Mitchell. J, Choi, Sang Ho, Harwood, Caroline S, Greenberg, E. Peter

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Fecal microbial transplant effect on clinical outcomes and fecal microbiome in active Crohn's disease von Suskind, David L, Brittnacher, Mitchell J, Wahbeh, Ghassan, Shaffer, Michele L, Hayden, Hillary S, Qin, Xuan, Singh, Namita, Damman, Christopher J, Hager, Kyle R, Nielson, Heather, Miller, Samuel I

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Human and Extracellular DNA Depletion for Metagenomic Analysis of Complex Clinical Infection Samples Yields Optimized Viable Microbiome Profiles von Nelson, Maria T., Pope, Christopher E., Marsh, Robyn L., Wolter, Daniel J., Weiss, Eli J., Hager, Kyle R., Vo, Anh T., Brittnacher, Mitchell J., Radey, Matthew C., Hayden, Hillary S., Eng, Alexander, Miller, Samuel I., Borenstein, Elhanan, Hoffman, Lucas R.

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CFTR dysregulation drives active selection of the gut microbiome von Meeker, Stacey M., Mears, Kevin S., Sangwan, Naseer, Brittnacher, Mitchell J., Weiss, Eli J., Treuting, Piper M., Tolley, Nicholas, Pope, Christopher E., Hager, Kyle R., Vo, Anh T., Paik, Jisun, Frevert, Charles W., Hayden, Hillary S., Hoffman, Lucas R., Miller, Samuel, Hajjar, Adeline M.

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Evolution of Burkholderia pseudomallei in recurrent melioidosis von Hayden, Hillary S, Lim, Regina, Brittnacher, Mitchell J, Sims, Elizabeth H, Ramage, Elizabeth R, Fong, Christine, Wu, Zaining, Crist, Eva, Chang, Jean, Zhou, Yang, Radey, Matthew, Rohmer, Laurence, Haugen, Eric, Gillett, Will, Wuthiekanun, Vanaporn, Peacock, Sharon J, Kaul, Rajinder, Miller, Samuel I, Manoil, Colin, Jacobs, Michael A

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Low Level Engraftment and Improvement following a Single Colonoscopic Administration of Fecal Microbiota to Patients with Ulcerative Colitis von Damman, Christopher J, Brittnacher, Mitchell J, Westerhoff, Maria, Hayden, Hillary S, Radey, Matthew, Hager, Kyle R, Marquis, Sara R, Miller, Samuel I, Zisman, Timothy L

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In vivo protein interaction network analysis reveals porin-localized antibiotic inactivation in Acinetobacter baumannii strain AB5075 von Wu, Xia, Chavez, Juan D., Schweppe, Devin K., Zheng, Chunxiang, Weisbrod, Chad R., Eng, Jimmy K., Murali, Ananya, Lee, Samuel A., Ramage, Elizabeth, Gallagher, Larry A., Kulasekara, Hemantha D., Edrozo, Mauna E., Kamischke, Cassandra N., Brittnacher, Mitchell J., Miller, Samuel I., Singh, Pradeep K., Manoil, Colin, Bruce, James E.

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underlying mechanism for the increased mutagenesis of lagging-strand genes in Bacillus subtilis von Million-Weaver, Samuel, Samadpour, Ariana N, Moreno-Habel, Daniela A, Nugent, Patrick, Brittnacher, Mitchell J, Weiss, Eli, Hayden, Hillary S, Miller, Samuel I, Liachko, Ivan, Merrikh, Houra

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Infants with cystic fibrosis have altered fecal functional capacities with potential clinical and metabolic consequences von Eng, Alexander, Hayden, Hillary S., Pope, Christopher E., Brittnacher, Mitchell J., Vo, Anh T., Weiss, Eli J., Hager, Kyle R., Leung, Daniel H., Heltshe, Sonya L., Raftery, Daniel, Miller, Samuel, Hoffman, Lucas R., Borenstein, Elhanan

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Burkholderia thailandensis as a Model System for the Study of the Virulence-Associated Type III Secretion System of Burkholderia pseudomallei von Haraga, Andrea, West, T. Eoin, Brittnacher, Mitchell J, Skerrett, Shawn J, Miller, Samuel I

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Functional genetic screen of human diversity reveals that a methionine salvage enzyme regulates inflammatory cell death von Ko, Dennis C., Gamazon, Eric R., Shukla, Kajal P., Pfuetzner, Richard A., Whittington, Dale, Holden, Tarah D., Brittnacher, Mitchell J., Fong, Christine, Radey, Matthew, Ogohara, Cassandra, Stark, Amy L., Akey, Joshua M., Dolan, M. Eileen, Wurfel, Mark M., Miller, Samuel I.

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GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis von Brittnacher, Mitchell J, Heltshe, Sonya L, Hayden, Hillary S, Radey, Matthew C, Weiss, Eli J, Damman, Christopher J, Zisman, Timothy L, Suskind, David L, Miller, Samuel I

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Type IV pili‐mediated secretion modulates Francisella virulence von Hager, Anthony J., Bolton, Diana L., Pelletier, Mark R., Brittnacher, Mitchell J., Gallagher, Larry A., Kaul, Rajinder, Skerrett, Shawn J., Miller, Samuel I., Guina, Tina

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Genome-Wide Screen in Francisella novicida for Genes Required for Pulmonary and Systemic Infection in Mice von Kraemer, Petra S, Mitchell, Allison, Pelletier, Mark R, Gallagher, Larry A, Wasnick, Mike, Rohmer, Laurence, Brittnacher, Mitchell J, Manoil, Colin, Skerett, Shawn J, Salama, Nina R

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Resources for Genetic and Genomic Analysis of Emerging Pathogen Acinetobacter baumannii von Gallagher, Larry A, Ramage, Elizabeth, Weiss, Eli J, Radey, Matthew, Hayden, Hillary S, Held, Kiara G, Huse, Holly K, Zurawski, Daniel V, Brittnacher, Mitchell J, Manoil, Colin

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A Francisella mutant in lipid A carbohydrate modification elicits protective immunity von Kanistanon, Duangjit, Hajjar, Adeline M, Pelletier, Mark R, Gallagher, Larry A, Kalhorn, Thomas, Shaffer, Scott A, Goodlett, David R, Rohmer, Laurence, Brittnacher, Mitchell J, Skerrett, Shawn J, Ernst, Robert K

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Genome Sequence of Francisella tularensis subspecies holarctica Strain FSC200, Isolated from a Child with Tularemia von Svensson, Kerstin, Sjödin, Andreas, Byström, Mona, Granberg, Malin, Brittnacher, Mitchell J, Rohmer, Laurence, Jacobs, Michael A, Sims-Day, Elizabeth H, Levy, Ruth, Zhou, Yang, Hayden, Hillary S, Lim, Regina, Chang, Jean, Guenthener, Donald, Kang, Allison, Haugen, Eric, Gillett, Will, Kaul, Rajinder, Forsman, Mats, Larsson, Pär, Johansson, Anders

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Genomic Analysis of Salmonella enterica Serovar Typhimurium Characterizes Strain Diversity for Recent U.S. Salmonellosis Cases and Identifies Mutations Linked to Loss of Fitness un... von Hayden, Hillary S, Matamouros, Susana, Hager, Kyle R, Brittnacher, Mitchell J, Rohmer, Laurence, Radey, Matthew C, Weiss, Eli J, Kim, Katie B, Jacobs, Michael A, Sims-Day, Elizabeth H, Yue, Min, Zaidi, Mussaret B, Schifferli, Dieter M, Manning, Shannon D, Walson, Judd L, Miller, Samuel I

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Fecal dysbiosis in infants with cystic fibrosis is associated with early linear growth failure von Hayden, Hillary S., Eng, Alexander, Pope, Christopher E., Brittnacher, Mitchell J., Vo, Anh T., Weiss, Eli J., Hager, Kyle R., Martin, Bryan D., Leung, Daniel H., Heltshe, Sonya L., Borenstein, Elhanan, Miller, Samuel I., Hoffman, Lucas R.

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PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes von Fong, Christine, Rohmer, Laurence, Radey, Matthew, Wasnick, Michael, Brittnacher, Mitchell J

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