Higher-Order Synaptic Interactions Coordinate Dynamics in Recurrent Networks von Chambers, Brendan, MacLean, Jason N

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NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding von Wang, Kanix, Stevens, Robert, Alachram, Halima, Li, Yu, Soldatova, Larisa, King, Ross, Ananiadou, Sophia, Schoene, Annika M., Li, Maolin, Christopoulou, Fenia, Ambite, José Luis, Matthew, Joel, Garg, Sahil, Hermjakob, Ulf, Marcu, Daniel, Sheng, Emily, Beißbarth, Tim, Wingender, Edgar, Galstyan, Aram, Gao, Xin, Chambers, Brendan, Pan, Weidi, Khomtchouk, Bohdan B., Evans, James A., Rzhetsky, Andrey

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Phenomenological Reproduction in Thompson and Mailer's New Journalism von Chambers, Brendan

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Ensemble stacking mitigates biases in inference of synaptic connectivity von Chambers, Brendan, Levy, Maayan, Dechery, Joseph B., MacLean, Jason N.

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Multineuronal activity patterns identify selective synaptic connections under realistic experimental constraints von Chambers, Brendan, MacLean, Jason N

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Ensemble stacking mitigates biases in inference of synaptic connectivity von Brendan Chambers, Maayan Levy, Joseph B. Dechery, Jason N. MacLean

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Semantic maps and metrics for science Semantic maps and metrics for science using deep transformer encoders von Chambers, Brendan, Evans, James

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Semantic maps and metrics for science Semantic maps and metrics for science using deep transformer encoders von Chambers, Brendan, Evans, James

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NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding von Wang, Kanix, Stevens, Robert, Alachram, Halima, Li, Yu, Soldatova, Larisa, King, Ross, Ananiadou, Sophia, Schoene, Annika M, Li, Maolin, Christopoulou, Fenia, Ambite, José Luis, Matthew, Joel, Garg, Sahil, Hermjakob, Ulf, Marcu, Daniel, Sheng, Emily, Beißbarth, Tim, Wingender, Edgar, Galstyan, Aram, Gao, Xin, Chambers, Brendan, Pan, Weidi, Khomtchouk, Bohdan B, Evans, James A, Rzhetsky, Andrey

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NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding von Wang, Kanix, Stevens, Robert, Alachram, Halima, Li, Yu, Soldatova, Larisa, King, Ross, Ananiadou, Sophia, Schoene, Annika M, Li, Maolin, Christopoulou, Fenia, Ambite, José Luis, Matthew, Joel, Garg, Sahil, Hermjakob, Ulf, Marcu, Daniel, Sheng, Emily, Beißbarth, Tim, Wingender, Edgar, Galstyan, Aram, Gao, Xin, Chambers, Brendan, Pan, Weidi, Khomtchouk, Bohdan B, Evans, James A, Rzhetsky, Andrey

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A Methodological Approach to Identify Natural Compounds with Antifibrotic Activity and the Potential to Treat Pulmonary Fibrosis Using Single-Cell Sequencing and Primary Human Lung... von Apte, Simon H, Groves, Penny L, Tan, Maxine E, Lutzky, Viviana P, de Silva, Tharushi, Monteith, Joshua N, Yerkovich, Stephanie T, O’Sullivan, Brendan J, Davis, Rohan A, Chambers, Daniel C

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Host-directed therapy targeting the Mycobacterium tuberculosis granuloma: a review von Kiran, Dilara, Podell, Brendan K., Chambers, Mark, Basaraba, Randall J.

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Dynamics of human monocytes and airway macrophages during healthy aging and after transplant von Byrne, Adam J, Powell, Joseph E, O'Sullivan, Brendan J, Ogger, Patricia P, Hoffland, Ashley, Cook, James, Bonner, Katie L, Hewitt, Richard J, Wolf, Simone, Ghai, Poonam, Walker, Simone A, Lukowski, Samuel W, Molyneaux, Philip L, Saglani, Sejal, Chambers, Daniel C, Maher, Toby M, Lloyd, Clare M

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Tracking the Evolution of Non–Small-Cell Lung Cancer von Jamal-Hanjani, Mariam, Wilson, Gareth A, McGranahan, Nicholas, Birkbak, Nicolai J, Watkins, Thomas B.K, Veeriah, Selvaraju, Shafi, Seema, Johnson, Diana H, Mitter, Richard, Rosenthal, Rachel, Salm, Max, Horswell, Stuart, Escudero, Mickael, Matthews, Nik, Rowan, Andrew, Chambers, Tim, Moore, David A, Turajlic, Samra, Xu, Hang, Lee, Siow-Ming, Forster, Martin D, Ahmad, Tanya, Hiley, Crispin T, Abbosh, Christopher, Falzon, Mary, Borg, Elaine, Marafioti, Teresa, Lawrence, David, Hayward, Martin, Kolvekar, Shyam, Panagiotopoulos, Nikolaos, Janes, Sam M, Thakrar, Ricky, Ahmed, Asia, Blackhall, Fiona, Summers, Yvonne, Shah, Rajesh, Joseph, Leena, Quinn, Anne M, Crosbie, Phil A, Naidu, Babu, Middleton, Gary, Langman, Gerald, Trotter, Simon, Nicolson, Marianne, Remmen, Hardy, Kerr, Keith, Chetty, Mahendran, Gomersall, Lesley, Fennell, Dean A, Nakas, Apostolos, Rathinam, Sridhar, Anand, Girija, Khan, Sajid, Russell, Peter, Ezhil, Veni, Ismail, Babikir, Irvin-Sellers, Melanie, Prakash, Vineet, Lester, Jason F, Kornaszewska, Malgorzata, Attanoos, Richard, Adams, Haydn, Davies, Helen, Dentro, Stefan, Taniere, Philippe, O’Sullivan, Brendan, Lowe, Helen L, Hartley, John A, Iles, Natasha, Bell, Harriet, Ngai, Yenting, Shaw, Jacqui A, Herrero, Javier, Szallasi, Zoltan, Schwarz, Roland F, Stewart, Aengus, Quezada, Sergio A, Le Quesne, John, Van Loo, Peter, Dive, Caroline, Hackshaw, Allan, Swanton, Charles

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Skyline: an open source document editor for creating and analyzing targeted proteomics experiments von MacLean, Brendan, Tomazela, Daniela M., Shulman, Nicholas, Chambers, Matthew, Finney, Gregory L., Frewen, Barbara, Kern, Randall, Tabb, David L., Liebler, Daniel C., MacCoss, Michael J.

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A cross-platform toolkit for mass spectrometry and proteomics von Chambers, Matthew C, Maclean, Brendan, Burke, Robert, Amodei, Dario, Ruderman, Daniel L, Neumann, Steffen, Gatto, Laurent, Fischer, Bernd, Pratt, Brian, Egertson, Jarrett, Hoff, Katherine, Kessner, Darren, Tasman, Natalie, Shulman, Nicholas, Frewen, Barbara, Baker, Tahmina A, Brusniak, Mi-Youn, Paulse, Christopher, Creasy, David, Flashner, Lisa, Kani, Kian, Moulding, Chris, Seymour, Sean L, Nuwaysir, Lydia M, Lefebvre, Brent, Kuhlmann, Frank, Roark, Joe, Rainer, Paape, Detlev, Suckau, Hemenway, Tina, Huhmer, Andreas, Langridge, James, Connolly, Brian, Chadick, Trey, Holly, Krisztina, Eckels, Josh, Deutsch, Eric W, Moritz, Robert L, Katz, Jonathan E, Agus, David B, MacCoss, Michael, Tabb, David L, Mallick, Parag

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Single-Cell Profiling of Cells in the Lung of a Patient with Chronic Hypersensitivity Pneumonitis Reveals Inflammatory Niche with Abundant CD39+ T Cells with Functional ATPase Phen... von de Silva, Tharushi Ayanthika, Apte, Simon, Voisey, Joanne, Spann, Kirsten, Tan, Maxine, Divithotawela, Chandima, Chambers, Daniel, O’Sullivan, Brendan

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Immunological Landscapes in Lung Transplantation: Insights from T Cell Profiling in BAL and PBMC von de Silva, Tharushi Ayanthika, Apte, Simon, Voisey, Joanne, Spann, Kirsten, Tan, Maxine, Chambers, Daniel, O'Sullivan, Brendan

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Redefine statistical significance von Benjamin, Daniel J., Berger, James O., Johannesson, Magnus, Nosek, Brian A., Wagenmakers, E.-J., Berk, Richard, Bollen, Kenneth A., Brembs, Björn, Brown, Lawrence, Camerer, Colin, Cesarini, David, Chambers, Christopher D., Clyde, Merlise, Cook, Thomas D., De Boeck, Paul, Dienes, Zoltan, Dreber, Anna, Easwaran, Kenny, Efferson, Charles, Fehr, Ernst, Fidler, Fiona, Field, Andy P., Forster, Malcolm, George, Edward I., Gonzalez, Richard, Goodman, Steven, Green, Edwin, Green, Donald P., Greenwald, Anthony G., Hadfield, Jarrod D., Hedges, Larry V., Held, Leonhard, Hua Ho, Teck, Hoijtink, Herbert, Hruschka, Daniel J., Imai, Kosuke, Imbens, Guido, Ioannidis, John P. A., Jeon, Minjeong, Jones, James Holland, Kirchler, Michael, Laibson, David, List, John, Little, Roderick, Lupia, Arthur, Machery, Edouard, Maxwell, Scott E., McCarthy, Michael, Moore, Don A., Morgan, Stephen L., Munafó, Marcus, Nakagawa, Shinichi, Nyhan, Brendan, Parker, Timothy H., Pericchi, Luis, Perugini, Marco, Rouder, Jeff, Rousseau, Judith, Savalei, Victoria, Schönbrodt, Felix D., Sellke, Thomas, Sinclair, Betsy, Tingley, Dustin, Van Zandt, Trisha, Vazire, Simine, Watts, Duncan J., Winship, Christopher, Wolpert, Robert L., Xie, Yu, Young, Cristobal, Zinman, Jonathan, Johnson, Valen E.

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Critical and independent role for SOCS3 in either myeloid or T cells in resistance to Mycobacterium tuberculosis von Carow, Berit, Reuschl, Ann-Kathrin, Gavier-Widén, Dolores, Jenkins, Brendan J, Ernst, Matthias, Yoshimura, Akihiko, Chambers, Benedict J, Rottenberg, Martin E

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