Combining LOPIT with differential ultracentrifugation for high-resolution spatial proteomics von Geladaki, Aikaterini, Kočevar Britovšek, Nina, Breckels, Lisa M., Smith, Tom S., Vennard, Owen L., Mulvey, Claire M., Crook, Oliver M., Gatto, Laurent, Lilley, Kathryn S.

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A Comprehensive Subcellular Atlas of the Toxoplasma Proteome via hyperLOPIT Provides Spatial Context for Protein Functions von Barylyuk, Konstantin, Koreny, Ludek, Ke, Huiling, Butterworth, Simon, Crook, Oliver M., Lassadi, Imen, Gupta, Vipul, Tromer, Eelco, Mourier, Tobias, Stevens, Tim J., Breckels, Lisa M., Pain, Arnab, Lilley, Kathryn S., Waller, Ross F.

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A draft map of the mouse pluripotent stem cell spatial proteome von Christoforou, Andy, Mulvey, Claire M., Breckels, Lisa M., Geladaki, Aikaterini, Hurrell, Tracey, Hayward, Penelope C., Naake, Thomas, Gatto, Laurent, Viner, Rosa, Arias, Alfonso Martinez, Lilley, Kathryn S.

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Assessing sub-cellular resolution in spatial proteomics experiments von Gatto, Laurent, Breckels, Lisa M., Lilley, Kathryn S.

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Proteome Mapping of a Cyanobacterium Reveals Distinct Compartment Organization and Cell-Dispersed Metabolism von Baers, Laura L, Breckels, Lisa M, Mills, Lauren A, Gatto, Laurent, Deery, Michael J, Stevens, Tim J, Howe, Christopher J, Lilley, Kathryn S, Lea-Smith, David J

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Mapping diversity in African trypanosomes using high resolution spatial proteomics von Moloney, Nicola M., Barylyuk, Konstantin, Tromer, Eelco, Crook, Oliver M., Breckels, Lisa M., Lilley, Kathryn S., Waller, Ross F., MacGregor, Paula

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Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers von Shin, John J. H., Crook, Oliver M., Borgeaud, Alicia C., Cattin-Ortolá, Jérôme, Peak-Chew, Sew Y., Breckels, Lisa M., Gillingham, Alison K., Chadwick, Jessica, Lilley, Kathryn S., Munro, Sean

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Spatiotemporal proteomic profiling of the pro-inflammatory response to lipopolysaccharide in the THP-1 human leukaemia cell line von Mulvey, Claire M., Breckels, Lisa M., Crook, Oliver M., Sanders, David J., Ribeiro, Andre L. R., Geladaki, Aikaterini, Christoforou, Andy, Britovšek, Nina Kočevar, Hurrell, Tracey, Deery, Michael J., Gatto, Laurent, Smith, Andrew M., Lilley, Kathryn S.

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Mass-spectrometry-based spatial proteomics data analysis using pRoloc and pRolocdata von Gatto, Laurent, Breckels, Lisa M., Wieczorek, Samuel, Burger, Thomas, Lilley, Kathryn S.

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Visualization of proteomics data using R and Bioconductor von Gatto, Laurent, Breckels, Lisa M., Naake, Thomas, Gibb, Sebastian

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Inferring differential subcellular localisation in comparative spatial proteomics using BANDLE von Crook, Oliver M., Davies, Colin T. R., Breckels, Lisa M., Christopher, Josie A., Gatto, Laurent, Kirk, Paul D. W., Lilley, Kathryn S.

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Using hyperLOPIT to perform high-resolution mapping of the spatial proteome von Mulvey, Claire M, Breckels, Lisa M, Geladaki, Aikaterini, Britovšek, Nina Kočevar, Nightingale, Daniel J H, Christoforou, Andy, Elzek, Mohamed, Deery, Michael J, Gatto, Laurent, Lilley, Kathryn S

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Global proteomics indicates subcellular-specific anti-ferroptotic responses to ionizing radiation von Christopher, Josie A, Breckels, Lisa M, Crook, Oliver M, Vazquez-Chantada, Mercedes, Barratt, Derek, Lilley, Kathryn S

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Advances in spatial proteomics: Mapping proteome architecture from protein complexes to subcellular localizations von Breckels, Lisa M., Hutchings, Charlotte, Ingole, Kishor D., Kim, Suyeon, Lilley, Kathryn S., Makwana, Mehul V., McCaskie, Kieran J.A., Villanueva, Eneko

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Deciphering Thylakoid Sub-compartments using a Mass Spectrometry-based Approach von Tomizioli, Martino, Lazar, Cosmin, Brugière, Sabine, Burger, Thomas, Salvi, Daniel, Gatto, Laurent, Moyet, Lucas, Breckels, Lisa M., Hesse, Anne-Marie, Lilley, Kathryn S., Seigneurin-Berny, Daphné, Finazzi, Giovanni, Rolland, Norbert, Ferro, Myriam

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System-wide analysis of RNA and protein subcellular localization dynamics von Villanueva, Eneko, Smith, Tom, Pizzinga, Mariavittoria, Elzek, Mohamed, Queiroz, Rayner M. L., Harvey, Robert F., Breckels, Lisa M., Crook, Oliver M., Monti, Mie, Dezi, Veronica, Willis, Anne E., Lilley, Kathryn S.

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Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics von Breckels, Lisa M, Holden, Sean B, Wojnar, David, Mulvey, Claire M, Christoforou, Andy, Groen, Arnoud, Trotter, Matthew W B, Kohlbacher, Oliver, Lilley, Kathryn S, Gatto, Laurent

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The subcellular organisation of Saccharomyces cerevisiae von Nightingale, Daniel JH, Geladaki, Aikaterini, Breckels, Lisa M, Oliver, Stephen G, Lilley, Kathryn S

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Identification of Trans-Golgi Network Proteins in Arabidopsis thaliana Root Tissue von Groen, Arnoud J, Sancho-Andrés, Gloria, Breckels, Lisa M, Gatto, Laurent, Aniento, Fernando, Lilley, Kathryn S

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A Bioconductor workflow for processing, evaluating, and interpreting expression proteomics data von Hutchings, Charlotte, Dawson, Charlotte S, Krueger, Thomas, Lilley, Kathryn S, Breckels, Lisa M

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