Viral Dynamics of SARS-CoV-2 Variants in Vaccinated and Unvaccinated Persons von Kissler, Stephen M, Fauver, Joseph R, Mack, Christina, Tai, Caroline G, Breban, Mallery I, Watkins, Anne E, Samant, Radhika M, Anderson, Deverick J, Metti, Jessica, Khullar, Gaurav, Baits, Rachel, MacKay, Matthew, Salgado, Daisy, Baker, Tim, Dudley, Joel T, Mason, Christopher E, Ho, David D, Grubaugh, Nathan D, Grad, Yonatan H

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Dengue Outbreak Caused by Multiple Virus Serotypes and Lineages, Colombia, 2023-2024 von Grubaugh, Nathan D, Torres-Hernández, Daniela, Murillo-Ortiz, Mónica A, Dávalos, Diana M, Lopez, Pio, Hurtado, Isabel C, Breban, Mallery I, Bourgikos, Ellie, Hill, Verity, López-Medina, Eduardo

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Neutralizing antibodies against the SARS-CoV-2 Delta and Omicron variants following heterologous CoronaVac plus BNT162b2 booster vaccination von Pérez-Then, Eddy, Lucas, Carolina, Monteiro, Valter Silva, Miric, Marija, Brache, Vivian, Cochon, Leila, Vogels, Chantal B. F., Malik, Amyn A., De la Cruz, Elena, Jorge, Aidelis, De los Santos, Margarita, Leon, Patricia, Breban, Mallery I., Billig, Kendall, Yildirim, Inci, Pearson, Claire, Downing, Randy, Gagnon, Emily, Muyombwe, Anthony, Razeq, Jafar, Campbell, Melissa, Ko, Albert I., Omer, Saad B., Grubaugh, Nathan D., Vermund, Sten H., Iwasaki, Akiko

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Impact of circulating SARS-CoV-2 variants on mRNA vaccine-induced immunity von Lucas, Carolina, Vogels, Chantal B. F., Yildirim, Inci, Rothman, Jessica E., Lu, Peiwen, Monteiro, Valter, Gehlhausen, Jeff R., Campbell, Melissa, Silva, Julio, Tabachnikova, Alexandra, Peña-Hernandez, Mario A., Muenker, M. Catherine, Breban, Mallery I., Fauver, Joseph R., Mohanty, Subhasis, Huang, Jiefang, Shaw, Albert C., Ko, Albert I., Omer, Saad B., Grubaugh, Nathan D., Iwasaki, Akiko

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A stem-loop RNA RIG-I agonist protects against acute and chronic SARS-CoV-2 infection in mice von Mao, Tianyang, Israelow, Benjamin, Lucas, Carolina, Vogels, Chantal B F, Gomez-Calvo, Maria Luisa, Fedorova, Olga, Breban, Mallery I, Menasche, Bridget L, Dong, Huiping, Linehan, Melissa, Wilen, Craig B, Landry, Marie L, Grubaugh, Nathan D, Pyle, Anna M, Iwasaki, Akiko

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Method versatility in RNA extraction-free PCR detection of SARS-CoV-2 in saliva samples von Allicock, Orchid M., Yolda-Carr, Devyn, Earnest, Rebecca, Breban, Mallery I., Vega, Noel, Ott, Isabel M., Kalinich, Chaney, Alpert, Tara, Petrone, Mary E, Wyllie, Anne L.

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Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques von Baaijens, Jasmijn A, Zulli, Alessandro, Ott, Isabel M, Nika, Ioanna, van der Lugt, Mart J, Petrone, Mary E, Alpert, Tara, Fauver, Joseph R, Kalinich, Chaney C, Vogels, Chantal B F, Breban, Mallery I, Duvallet, Claire, McElroy, Kyle A, Ghaeli, Newsha, Imakaev, Maxim, Mckenzie-Bennett, Malaika F, Robison, Keith, Plocik, Alex, Schilling, Rebecca, Pierson, Martha, Littlefield, Rebecca, Spencer, Michelle L, Simen, Birgitte B, Hanage, William P, Grubaugh, Nathan D, Peccia, Jordan, Baym, Michael

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Travel surveillance uncovers dengue virus dynamics and introductions in the Caribbean von Taylor-Salmon, Emma, Hill, Verity, Paul, Lauren M., Koch, Robert T., Breban, Mallery I., Chaguza, Chrispin, Sodeinde, Afeez, Warren, Joshua L., Bunch, Sylvia, Cano, Natalia, Cone, Marshall, Eysoldt, Sarah, Garcia, Alezaundra, Gilles, Nicadia, Hagy, Andrew, Heberlein, Lea, Jaber, Rayah, Kassens, Elizabeth, Colarusso, Pamela, Davis, Amanda, Baudin, Samantha, Rico, Edhelene, Mejía-Echeverri, Álvaro, Scott, Blake, Stanek, Danielle, Zimler, Rebecca, Muñoz-Jordán, Jorge L., Santiago, Gilberto A., Adams, Laura E., Paz-Bailey, Gabriela, Spillane, Melanie, Katebi, Volha, Paulino-Ramírez, Robert, Mueses, Sayira, Peguero, Armando, Sánchez, Nelissa, Norman, Francesca F., Galán, Juan-Carlos, Huits, Ralph, Hamer, Davidson H., Vogels, Chantal B. F., Morrison, Andrea, Michael, Scott F., Grubaugh, Nathan D.

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Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons von Chaguza, Chrispin, Coppi, Andreas, Earnest, Rebecca, Ferguson, David, Kerantzas, Nicholas, Warner, Frederick, Young, H. Patrick, Breban, Mallery I., Billig, Kendall, Koch, Robert Tobias, Pham, Kien, Kalinich, Chaney C., Ott, Isabel M., Fauver, Joseph R., Hahn, Anne M., Tikhonova, Irina R., Castaldi, Christopher, De Kumar, Bony, Pettker, Christian M., Warren, Joshua L., Weinberger, Daniel M., Landry, Marie L., Peaper, David R., Schulz, Wade, Vogels, Chantal B.F., Grubaugh, Nathan D.

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Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection von Chaguza, Chrispin, Hahn, Anne M., Petrone, Mary E., Zhou, Shuntai, Ferguson, David, Breban, Mallery I., Pham, Kien, Peña-Hernández, Mario A., Castaldi, Christopher, Hill, Verity, Billig, Kendall, Earnest, Rebecca, Fauver, Joseph R., Kalinch, Chaney C., Kerantzas, Nicholas, Koch, Tobias R., De Kumar, Bony, Landry, Marie L., Ott, Isabel M., Peaper, David, Tikhonova, Irina R., Vogels, Chantal B.F., Schulz, Wade, Swanstrom, Ronald I., Roberts, Scott C., Grubaugh, Nathan D.

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The community‐wide effectiveness of municipal larval control programs for West Nile virus risk reduction in Connecticut, USA von McMillan, Joseph R, Harden, Christina A, Burtis, James C, Breban, Mallery I, Shepard, John J, Petruff, Tanya A, Misencik, Michael J, Bransfield, Angela B, Poggi, Joseph D, Harrington, Laura C, Andreadis, Theodore G, Armstrong, Philip M

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DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus von Vogels, Chantal B F, Hill, Verity, Breban, Mallery I, Chaguza, Chrispin, Paul, Lauren M, Sodeinde, Afeez, Taylor-Salmon, Emma, Ott, Isabel M, Petrone, Mary E, Dijk, Dennis, Jonges, Marcel, Welkers, Matthijs R A, Locksmith, Timothy, Dong, Yibo, Tarigopula, Namratha, Tekin, Omer, Schmedes, Sarah, Bunch, Sylvia, Cano, Natalia, Jaber, Rayah, Panzera, Charles, Stryker, Ian, Vergara, Julieta, Zimler, Rebecca, Kopp, Edgar, Heberlein, Lea, Herzog, Kaylee S, Fauver, Joseph R, Morrison, Andrea M, Michael, Scott F, Grubaugh, Nathan D

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Nonsystematic Reporting Biases of the SARS-CoV-2 Variant Mu Could Impact Our Understanding of the Epidemiological Dynamics of Emerging Variants von Petrone, Mary E, Lucas, Carolina, Menasche, Bridget, Breban, Mallery I, Yildirim, Inci, Campbell, Melissa, Omer, Saad B, Holmes, Edward C, Ko, Albert I, Grubaugh, Nathan D, Iwasaki, Akiko, Wilen, Craig B, Vogels, Chantal B F, Fauver, Joseph R

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An outbreak of SARS‐CoV‐2 on a transplant unit in the early vaccination era von Roberts, Scott C., Foppiano Palacios, Carlo, Grubaugh, Nathan D., Alpert, Tara, Ott, Isabel M., Breban, Mallery I., Martinello, Richard A., Smith, Cindy, Davis, Matthew W., Mcmanus, Dayna, Tirmizi, Samad, Topal, Jeffrey E., Azar, Marwan M., Malinis, Maricar

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Genome Sequence of a Recombinant SARS-CoV-2 Lineage XAM (BA.1.1/BA.2.9) Strain from a Clinical Sample in Santo Domingo, Dominican Republic von Paulino-Ramírez, Robert, Pham, Kien, Breban, Mallery I, Peguero, Armando, Jabier, Maridania, Sánchez, Nelissa, Eustate, Iscania, Ruiz, Ingrid, Grubaugh, Nathan D, Hahn, Anne M

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Assessment of Clinical Effectiveness of BNT162b2 COVID-19 Vaccine in US Adolescents von Oliveira, Carlos R, Niccolai, Linda M, Sheikha, Hassan, Elmansy, Lina, Kalinich, Chaney C, Grubaugh, Nathan D, Shapiro, Eugene D

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Sequencing SARS-CoV-2 genomes from saliva von Alpert, Tara, Vogels, Chantal B F, Breban, Mallery I, Petrone, Mary E, Wyllie, Anne L, Grubaugh, Nathan D, Fauver, Joseph R

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Heterotypic vaccination responses against SARS-CoV-2 Omicron BA.2 von Fang, Zhenhao, Peng, Lei, Lucas, Carolina, Lin, Qianqian, Zhou, Liqun, Yang, Luojia, Feng, Yanzhi, Ren, Ping, Renauer, Paul A., Monteiro, Valter S., Hahn, Anne M., Park, Jonathan J., Zhou, Xiaoyu, Grubaugh, Nathan D., Wilen, Craig B., Chen, Sidi

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Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States von Alpert, Tara, Brito, Anderson F., Lasek-Nesselquist, Erica, Rothman, Jessica, Valesano, Andrew L., MacKay, Matthew J., Petrone, Mary E., Breban, Mallery I., Watkins, Anne E., Vogels, Chantal B.F., Kalinich, Chaney C., Dellicour, Simon, Russell, Alexis, Kelly, John P., Shudt, Matthew, Plitnick, Jonathan, Schneider, Erasmus, Fitzsimmons, William J., Khullar, Gaurav, Metti, Jessica, Dudley, Joel T., Nash, Megan, Beaubier, Nike, Wang, Jianhui, Liu, Chen, Hui, Pei, Muyombwe, Anthony, Downing, Randy, Razeq, Jafar, Bart, Stephen M., Grills, Ardath, Morrison, Stephanie M., Murphy, Steven, Neal, Caleb, Laszlo, Eva, Rennert, Hanna, Cushing, Melissa, Westblade, Lars, Velu, Priya, Craney, Arryn, Cong, Lin, Peaper, David R., Landry, Marie L., Cook, Peter W., Fauver, Joseph R., Mason, Christopher E., Lauring, Adam S., St. George, Kirsten, MacCannell, Duncan R., Grubaugh, Nathan D.

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Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2 von Vogels, Chantal B F, Breban, Mallery I, Ott, Isabel M, Alpert, Tara, Petrone, Mary E, Watkins, Anne E, Kalinich, Chaney C, Earnest, Rebecca, Rothman, Jessica E, Goes de Jesus, Jaqueline, Morales Claro, Ingra, Magalhães Ferreira, Giulia, Crispim, Myuki A E, Singh, Lavanya, Tegally, Houriiyah, Anyaneji, Ugochukwu J, Hodcroft, Emma B, Mason, Christopher E, Khullar, Gaurav, Metti, Jessica, Dudley, Joel T, MacKay, Matthew J, Nash, Megan, Wang, Jianhui, Liu, Chen, Hui, Pei, Murphy, Steven, Neal, Caleb, Laszlo, Eva, Landry, Marie L, Muyombwe, Anthony, Downing, Randy, Razeq, Jafar, de Oliveira, Tulio, Faria, Nuno R, Sabino, Ester C, Neher, Richard A, Fauver, Joseph R, Grubaugh, Nathan D

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