Tackling the widespread and critical impact of batch effects in high-throughput data von Irizarry, Rafael A, Leek, Jeffrey T, Scharpf, Robert B, Bravo, Héctor Corrada, Simcha, David, Langmead, Benjamin, Johnson, W. Evan, Geman, Donald, Baggerly, Keith

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Transcriptome Remodeling in Trypanosoma cruzi and Human Cells during Intracellular Infection von Li, Yuan, Shah-Simpson, Sheena, Okrah, Kwame, Belew, A Trey, Choi, Jungmin, Caradonna, Kacey L, Padmanabhan, Prasad, Ndegwa, David M, Temanni, M Ramzi, Corrada Bravo, Héctor, El-Sayed, Najib M, Burleigh, Barbara A

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Increased methylation variation in epigenetic domains across cancer types von Irizarry, Rafael A, Feinberg, Andrew P, Hansen, Kasper Daniel, Timp, Winston, Bravo, Héctor Corrada, Sabunciyan, Sarven, Langmead, Benjamin, McDonald, Oliver G, Wen, Bo, Wu, Hao, Liu, Yun, Diep, Dinh, Briem, Eirikur, Zhang, Kun

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Metaviz: interactive statistical and visual analysis of metagenomic data von Wagner, Justin, Chelaru, Florin, Kancherla, Jayaram, Paulson, Joseph N, Zhang, Alexander, Felix, Victor, Mahurkar, Anup, Elmqvist, Niklas, Corrada Bravo, Héctor

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Analysis and correction of compositional bias in sparse sequencing count data von Kumar, M Senthil, Slud, Eric V, Okrah, Kwame, Hicks, Stephanie C, Hannenhalli, Sridhar, Corrada Bravo, Héctor

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Basil Seeds as a Novel Food, Source of Nutrients and Functional Ingredients with Beneficial Properties: A Review von Calderon Bravo, Hector, Vera Cespedes, Natalia, Zura-Bravo, Liliana, Munoz, Loreto A.

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Yanagi: Fast and interpretable segment-based alternative splicing and gene expression analysis von Gunady, Mohamed K, Mount, Stephen M, Corrada Bravo, Héctor

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Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment von Pop, Mihai, Paulson, Joseph N, Chakraborty, Subhra, Astrovskaya, Irina, Lindsay, Brianna R, Li, Shan, Bravo, Héctor Corrada, Harro, Clayton, Parkhill, Julian, Walker, Alan W, Walker, Richard I, Sack, David A, Stine, O Colin

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Removing batch effects for prediction problems with frozen surrogate variable analysis von Parker, Hilary S, Corrada Bravo, Héctor, Leek, Jeffrey T

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The Educational Quality of Laparoscopic Right Hemicolectomy Videos on YouTube von Moctezuma-Velázquez, Paulina, Santes, Oscar, Sainz-Hernández, Juan C., Álvarez-Bautista, Franciso E., Bravo, Héctor E., Salgado-Nesme, Noel, Moctezuma-Velázquez, Carlos

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Outcomes of Ileoanal Pouches: Lessons Learned at a Hospital Center in a Developing Country von Alvarez-Bautista, Francisco E., Hoyos-Torres, Alejandro, Trejo-Avila, Mario, Bravo-Avila, Héctor E., Ruiz-Muñoz, Erick A., Vergara-Fernández, Omar, Salgado-Nesme, Noel

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Automated classification of bird and amphibian calls using machine learning: A comparison of methods von Acevedo, Miguel A., Corrada-Bravo, Carlos J., Corrada-Bravo, Héctor, Villanueva-Rivera, Luis J., Aide, T. Mitchell

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DYNAMIC OF INDOLE ALKALOIDS IN A SOIL AND ITS RELATIONSHIPS WITH ALLELOPATHIC PROPERTIES von Copaja, Sylvia V., López, María L., Bravo, Héctor R.

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Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz [version 2; peer review: 3 approved] von Wagner, Justin, Kancherla, Jayaram, Braccia, Domenick, Matsumara, James, Felix, Victor, Crabtree, Jonathan, Mahurkar, Anup, Corrada Bravo, Héctor

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Differential abundance analysis for microbial marker-gene surveys von Paulson, Joseph N, Stine, O Colin, Bravo, Héctor Corrada, Pop, Mihai

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Gene Expression Signatures Based on Variability can Robustly Predict Tumor Progression and Prognosis von Dinalankara, Wikum, Bravo, Héctor Corrada

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A Decision-Theory Approach to Interpretable Set Analysis for High-Dimensional Data von Boca, Simina M., Bravo, Héctor Corrada, Caffo, Brian, Leek, Jeffrey T., Parmigiani, Giovanni

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Determinants of expression variability von Alemu, Elfalem Y, Carl, Jr, Joseph W, Corrada Bravo, Héctor, Hannenhalli, Sridhar

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Identification of filamentary structures in the environment of superclusters of galaxies in the Local Universe von Santiago-Bautista, Iris, Caretta, Cesar A., Bravo-Alfaro, Hector, Pointecouteau, Etienne, Andernach, Heinz

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Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz [version 1; peer review: 3 approved] von Wagner, Justin, Kancherla, Jayaram, Braccia, Domenick, Matsumara, James, Felix, Victor, Crabtree, Jonathan, Mahurkar, Anup, Corrada Bravo, Héctor

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