PneumoBrowse 2: an integrated visual platform for curated genome annotation and multiomics data analysis of Streptococcus pneumoniae von Janssen, Axel B, Gibson, Paddy S, Bravo, Afonso M, de Bakker, Vincent, Slager, Jelle, Veening, Jan-Willem

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2FAST2Q: a general-purpose sequence search and counting program for FASTQ files von Bravo, Afonso M, Typas, Athanasios, Veening, Jan-Willem

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An efficient in vivo -inducible CRISPR interference system for group A Streptococcus genetic analysis and pathogenesis studies von Bjånes, Elisabet, Stream, Alexandra, Janssen, Axel B, Gibson, Paddy S, Bravo, Afonso M, Dahesh, Samira, Baker, Jonathon L, Varble, Andrew, Nizet, Victor, Veening, Jan-Willem

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CRISPRi-seq for genome-wide fitness quantification in bacteria von de Bakker, Vincent, Liu, Xue, Bravo, Afonso M., Veening, Jan-Willem

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CRISPRi-seq for genome-wide fitness quantification in bacteria von de Bakker, Vincent, Liu, Xue, Bravo, Afonso M., Veening, Jan-Willem

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Type III-B CRISPR-Cas cascade of proteolytic cleavages von Steens, Jurre A, Bravo, Jack P K, Salazar, Carl Raymund P, Yildiz, Caglar, Amieiro, Afonso M, Köstlbacher, Stephan, Prinsen, Stijn H P, Andres, Ane S, Patinios, Constantinos, Bardis, Andreas, Barendregt, Arjan, Scheltema, Richard A, Ettema, Thijs J G, van der Oost, John, Taylor, David W, Staals, Raymond H J

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Randomly barcoded transposon mutant libraries for gut commensals I: Strategies for efficient library construction von Tripathi, Surya, Voogdt, Carlos Geert Pieter, Bassler, Stefan Oliver, Anderson, Mary, Huang, Po-Hsun, Sakenova, Nazgul, Capraz, Tümay, Jain, Sunit, Koumoutsi, Alexandra, Bravo, Afonso Martins, Trotter, Valentine, Zimmerman, Michael, Sonnenburg, Justin L., Buie, Cullen, Typas, Athanasios, Deutschbauer, Adam M., Shiver, Anthony L., Huang, Kerwyn Casey

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Randomly barcoded transposon mutant libraries for gut commensals II: Applying libraries for functional genetics von Voogdt, Carlos Geert Pieter, Tripathi, Surya, Bassler, Stefan Oliver, McKeithen-Mead, Saria A., Guiberson, Emma R., Koumoutsi, Alexandra, Bravo, Afonso Martins, Buie, Cullen, Zimmermann, Michael, Sonnenburg, Justin L., Typas, Athanasios, Deutschbauer, Adam M., Shiver, Anthony L., Huang, Kerwyn Casey

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Detection of Leishmania DNA and blood meal sources in phlebotomine sand flies (Diptera: Psychodidae) in western of Spain: Update on distribution and risk factors associated von Bravo-Barriga, D., Parreira, R., Maia, C., Afonso, M.O., Blanco-Ciudad, J., Serrano, F.J., Pérez-Martín, J.E., Gómez-Gordo, L., Campino, L., Reina, D., Frontera, E.

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Effectiveness of hand hygiene and provision of information in preventing influenza cases requiring hospitalization von Godoy, Pere, Castilla, Jesús, Delgado-Rodríguez, Miguel, Martín, Vicente, Soldevila, Núria, Alonso, Jordi, Astray, Jenaro, Baricot, Maretva, Cantón, Rafael, Castro, Ady, González-Candelas, Fernando, Mayoral, José María, Quintana, José María, Pumarola, Tomás, Tamames, Sonia, Domínguez, Angela

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Association of IL23R and ERAP1 genes with ankylosing spondylitis in a Portuguese population von Pimentel-Santos, F M, Ligeiro, D, Matos, M, Mourão, A F, Sousa, E, Pinto, P, Ribeiro, A, Sousa, M, Barcelos, A, Godinho, F, Cruz, M, Fonseca, J E, Guedes-Pinto, H, Trindade, H, Evans, D M, Brown, M A, Branco, J C

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Effectiveness of pandemic and seasonal influenza vaccines in preventing pandemic influenza-associated hospitalization von Domínguez, Angela, Castilla, Jesús, Godoy, Pere, Delgado-Rodríguez, Miguel, Martín, Vicente, Saez, Marc, Soldevila, Núria, Quintana, José María, Mayoral, José María, Astray, Jenaro, González-Candelas, Fernando, Cantón, Rafael, Tamames, Sonia, Castro, Ady, Baricot, Maretva, Alonso, Jordi, Pumarola, Tomás

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Spectrum of ankylosing spondylitis in Portugal. Development of BASDAI, BASFI, BASMI and mSASSS reference centile charts von Pimentel-Santos, Fernando M., Mourão, Ana Filipa, Ribeiro, Célia, Costa, José, Santos, Helena, Barcelos, Anabela, Pinto, Patricia, Godinho, Fátima, Cruz, Margarida, Vieira-Sousa, Elsa, Santos, Rui André, Rabiais, Sara, Félix, Jorge, Fonseca, João Eurico, Guedes-Pinto, Henrique, Brown, Matthew A, Branco, Jaime C.

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Different prognosis in hospitalized patients with influenza one season after the pandemic H1N1 influenza of 2009–2010 in Spain von Delgado‐Rodríguez, Miguel, Castilla, Jesús, Godoy, Pere, Martín, Vicente, Soldevila, Nuria, Alonso, Jordi, Astray, Jenaro, Baricot, Maretva, Galán, Juan C., Castro, Ady, Gónzález‐Candelas, Fernando, Mayoral, José M., Quintana, José M., Pumarola, Tomás, Tamames, Sonia, Sáez, Marc, Domínguez, Angela

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HLA alleles and HLA-B27 haplotypes associated with susceptibility and severity of ankylosing spondylitis in a Portuguese population von Pimentel-Santos, F. M., Matos, M., Ligeiro, D., Mourão, A. F., Ribeiro, C., Costa, J., Santos, H., Barcelos, A., Pinto, P., Cruz, M., Sousa, E., Santos, R. A., Fonseca, J. E., Trindade, H., Guedes-Pinto, H., Branco, J. C.

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Biomarks in secondary osteoporosis von Aroso Dias, A, Lopes Vaz, A, Hargreaves, M, Afonso, C, Araújø, D, Bravo, T

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