iSPOT: a web tool to infer the interaction specificity of families of protein modules von Brannetti, Barbara, Helmer-Citterich, Manuela

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Protein surface similarities: a survey of methods to describe and compare protein surfaces von Via, A, Ferrè, F, Brannetti, B, Helmer-Citterich, M

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A Combined Experimental and Computational Strategy to Define Protein Interaction Networks for Peptide Recognition Modules von Amy Hin Yan Tong, Drees, Becky, Nardelli, Giuliano, Bader, Gary D., Brannetti, Barbara, Castagnoli, Luisa, Evangelista, Marie, Ferracuti, Silvia, Nelson, Bryce, Paoluzi, Serena, Quondam, Michele, Zucconi, Adriana, Christopher W. V. Hogue, Fields, Stanley, Boone, Charles, Cesareni, Gianni

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ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins von Puntervoll, Pål, Linding, Rune, Gemünd, Christine, Chabanis-Davidson, Sophie, Mattingsdal, Morten, Cameron, Scott, Martin, David M. A., Ausiello, Gabriele, Brannetti, Barbara, Costantini, Anna, Ferrè, Fabrizio, Maselli, Vincenza, Via, Allegra, Cesareni, Gianni, Diella, Francesca, Superti-Furga, Giulio, Wyrwicz, Lucjan, Ramu, Chenna, McGuigan, Caroline, Gudavalli, Rambabu, Letunic, Ivica, Bork, Peer, Rychlewski, Leszek, Küster, Bernhard, Helmer-Citterich, Manuela, Hunter, William N., Aasland, Rein, Gibson, Toby J.

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Three-dimensional view of the surface motif associated with the P-loop structure: cis and trans cases of convergent evolution von Via, A, Ferrè, F, Brannetti, B, Valencia, A, Helmer-Citterich, M

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Distinct Binding Specificity of the Multiple PDZ Domains of INADL, a Human Protein with Homology to INAD from Drosophila melanogaster von Vaccaro, Paola, Brannetti, Barbara, Montecchi-Palazzi, Luisa, Philipp, Stephan, Citterich, Manuela Helmer, Cesareni, Gianni, Dente, Luciana

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SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family von Brannetti, Barbara, Via, Allegra, Cestra, Gianluca, Cesareni, Gianni, Citterich, Manuela Helmer

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iSPOT: a web tool for the analysis and recognition of protein domain specificity von Brannetti, Barbara, Zanzoni, Andreas, Montecchi-Palazzi, Luisa, Cesareni, Gianni, Helmer-Citterich, Manuela

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ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins von Puntervoll, P, Linding, R, Gemund, C, Chabanis-Davidson, S, Mattingsdal, M, Cameron, S, Martin, DM, Ausiello, G, Brannetti, B, Costantini, A, Ferre, F, Maselli, V, Via, A, Cesareni, G, Diella, F, Superti-Furga, G, Wyrwicz, L, Ramu, C, McGuigan, C, Gudavalli, R, Letunic, I, Bork, P, Rychlewski, L, Kuster, B, Helmer-Citterich, M, Hunter, WN, Aasland, R, Gibson, TJ

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Development of computational tools for the inference of protein interaction specificity rules and functional annotation using structural information von Ferrè, Fabrizio, Via, Allegra, Ausiello, Gabriele, Brannetti, Barbara, Zanzoni, Andreas, Helmer-Citterich, Manuela

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