The ENCODE Blacklist: Identification of Problematic Regions of the Genome von Amemiya, Haley M., Kundaje, Anshul, Boyle, Alan P.

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Predicting functional variants in enhancer and promoter elements using RegulomeDB von Dong, Shengcheng, Boyle, Alan P.

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Litigating Climate Change under Part XII of the LOSC von Boyle, Alan

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CLIMATE CHANGE, THE PARIS AGREEMENT AND HUMAN RIGHTS von Boyle, Alan

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Human rights and the environment : where next? von Boyle, A.

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Dynamic trans-Acting Factor Colocalization in Human Cells von Xie, Dan, Boyle, Alan P., Wu, Linfeng, Zhai, Jie, Kawli, Trupti, Snyder, Michael

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Transposable elements contribute to cell and species-specific chromatin looping and gene regulation in mammalian genomes von Diehl, Adam G., Ouyang, Ningxin, Boyle, Alan P.

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Enhancing portability of trans-ancestral polygenic risk scores through tissue-specific functional genomic data integration von Crone, Bradley, Boyle, Alan P

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Mining the Unknown: Assigning Function to Noncoding Single Nucleotide Polymorphisms von Nishizaki, Sierra S, Boyle, Alan P

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Linking disease associations with regulatory information in the human genome von Schaub, Marc A, Boyle, Alan P, Kundaje, Anshul, Batzoglou, Serafim, Snyder, Michael

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Factors influencing the compressive strength of fly ash based geopolymers von Soutsos, Marios, Boyle, Alan P., Vinai, Raffaele, Hadjierakleous, Anastasis, Barnett, Stephanie J.

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Prioritization of regulatory variants with tissue-specific function in the non-coding regions of human genome von Dong, Shengcheng, Boyle, Alan P

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Annotation of functional variation in personal genomes using RegulomeDB von Boyle, Alan P, Hong, Eurie L, Hariharan, Manoj, Cheng, Yong, Schaub, Marc A, Kasowski, Maya, Karczewski, Konrad J, Park, Julie, Hitz, Benjamin C, Weng, Shuai, Cherry, J Michael, Snyder, Michael

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Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures von Phanstiel, Douglas H, Boyle, Alan P, Araya, Carlos L, Snyder, Michael P

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TRACE: transcription factor footprinting using chromatin accessibility data and DNA sequence von Ouyang, Ningxin, Boyle, Alan P.

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SEMplMe: a tool for integrating DNA methylation effects in transcription factor binding affinity predictions von Nishizaki, Sierra S, Boyle, Alan P

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Mango: a bias-correcting ChIA-PET analysis pipeline von Phanstiel, Douglas H, Boyle, Alan P, Heidari, Nastaran, Snyder, Michael P

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Annotating and prioritizing human non-coding variants with RegulomeDB v.2 von Dong, Shengcheng, Zhao, Nanxiang, Spragins, Emma, Kagda, Meenakshi S., Li, Mingjie, Assis, Pedro, Jolanki, Otto, Luo, Yunhai, Cherry, J. Michael, Boyle, Alan P., Hitz, Benjamin C.

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High-Resolution Mapping and Characterization of Open Chromatin across the Genome von Boyle, Alan P., Davis, Sean, Shulha, Hennady P., Meltzer, Paul, Margulies, Elliott H., Weng, Zhiping, Furey, Terrence S., Crawford, Gregory E.

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Extensive Variation in Chromatin States Across Humans von Kasowski, Maya, Kyriazopoulou-Panagiotopoulou, Sofia, Grubert, Fabian, Zaugg, Judith B., Kundaje, Anshul, Liu, Yuling, Boyle, Alan P., Zhang, Qiangfeng Cliff, Zakharia, Fouad, Spacek, Damek V., Li, Jingjing, Xie, Dan, Olarenn-George, Anthony, Steinmetz, Lars M., Hogenesch, John B., Kellis, Manolis, Batzoglou, Serafim, Snyder, Michael

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