Evolutionary Action-Machine Learning Model Identifies Candidate Genes Associated With Early-Onset Coronary Artery Disease von Shapiro, Dillon, Lee, Kwanghyuk, Asmussen, Jennifer, Bourquard, Thomas, Lichtarge, Olivier

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Functional variants identify sex-specific genes and pathways in Alzheimer’s Disease von Bourquard, Thomas, Lee, Kwanghyuk, Al-Ramahi, Ismael, Pham, Minh, Shapiro, Dillon, Lagisetty, Yashwanth, Soleimani, Shirin, Mota, Samantha, Wilhelm, Kevin, Samieinasab, Maryam, Kim, Young Won, Huh, Eunna, Asmussen, Jennifer, Katsonis, Panagiotis, Botas, Juan, Lichtarge, Olivier

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MAbTope: A Method for Improved Epitope Mapping von Bourquard, Thomas, Musnier, Astrid, Puard, Vincent, Tahir, Shifa, Ayoub, Mohammed Akli, Jullian, Yann, Boulo, Thomas, Gallay, Nathalie, Watier, Hervé, Bruneau, Gilles, Reiter, Eric, Crépieux, Pascale, Poupon, Anne

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Evolutionary action of mutations reveals antimicrobial resistance genes in Escherichia coli von Marciano, David C., Wang, Chen, Hsu, Teng-Kuei, Bourquard, Thomas, Atri, Benu, Nehring, Ralf B., Abel, Nicholas S., Bowling, Elizabeth A., Chen, Taylor J., Lurie, Pamela D., Katsonis, Panagiotis, Rosenberg, Susan M., Herman, Christophe, Lichtarge, Olivier

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Phosphorylation of β-arrestin2 at Thr383 by MEK underlies β-arrestin-dependent activation of Erk1/2 by GPCRs von Cassier, Elisabeth, Gallay, Nathalie, Bourquard, Thomas, Claeysen, Sylvie, Bockaert, Joël, Crépieux, Pascale, Poupon, Anne, Reiter, Eric, Marin, Philippe, Vandermoere, Franck

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Accurate determination of epitope for antibodies with unknown 3D structures von Tahir, Shifa, Bourquard, Thomas, Musnier, Astrid, Jullian, Yann, Corde, Yannick, Omahdi, Zakaria, Mathias, Laetitia, Reiter, Eric, Crépieux, Pascale, Bruneau, Gilles, Poupon, Anne

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A collaborative filtering approach for protein-protein docking scoring functions von Bourquard, Thomas, Bernauer, Julie, Azé, Jérôme, Poupon, Anne

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Postembryonic Fish Brain Proliferation Zones Exhibit Neuroepithelial‐Type Gene Expression Profile von Dambroise, Emilie, Simion, Matthieu, Bourquard, Thomas, Bouffard, Stéphanie, Rizzi, Barbara, Jaszczyszyn, Yan, Bourge, Mickaël, Affaticati, Pierre, Heuzé, Aurélie, Jouralet, Julia, Edouard, Joanne, Brown, Spencer, Thermes, Claude, Poupon, Anne, Reiter, Eric, Sohm, Frédéric, Bourrat, Franck, Joly, Jean‐Stéphane

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Applying artificial intelligence to accelerate and de-risk antibody discovery von Musnier, Astrid, Dumet, Christophe, Mitra, Saheli, Verdier, Adrien, Keskes, Raouf, Chassine, Augustin, Jullian, Yann, Cortes, Mélanie, Corde, Yannick, Omahdi, Zakaria, Puard, Vincent, Bourquard, Thomas, Poupon, Anne

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Evolutionary Origin of Bone Morphogenetic Protein 15 and Growth and Differentiation Factor 9 and Differential Selective Pressure Between Mono- and Polyovulating Species1 von Monestier, Olivier, Servin, Bertrand, Auclair, Sylvain, Bourquard, Thomas, Poupon, Anne, Pascal, Géraldine, Fabre, Stéphane

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Integration of large‐scale molecular networks and exomic data can identify Alzheimer's disease genes von Lagiesetty, Yashwanth, Bourquard, Thomas, Lichtarge, Olivier

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Integration of large‐scale molecular networks and exomic data can identify Alzheimer's disease genes: Genetics/omics and systems biology von Lagiesetty, Yashwanth, Bourquard, Thomas, Lichtarge, Olivier

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A New in Silico Antibody Similarity Measure Both Identifies Large Sets of Epitope Binders with Distinct CDRs and Accurately Predicts Off-Target Reactivity von Musnier, Astrid, Bourquard, Thomas, Vallet, Amandine, Mathias, Laetitia, Bruneau, Gilles, Ayoub, Mohammed Akli, Travert, Ophélie, Corde, Yannick, Gallay, Nathalie, Boulo, Thomas, Cortes, Sandra, Watier, Hervé, Crépieux, Pascale, Reiter, Eric, Poupon, Anne

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Identification of evolutionarily stable functional and immunogenic sites across the SARS-CoV-2 proteome and greater coronavirus family von Wang, Chen, Konecki, Daniel M, Marciano, David C, Govindarajan, Harikumar, Williams, Amanda M, Wastuwidyaningtyas, Brigitta, Bourquard, Thomas, Katsonis, Panagiotis, Lichtarge, Olivier

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Unraveling the molecular architecture of a G protein-coupled receptor/β-arrestin/Erk module complex von Bourquard, Thomas, Landomiel, Flavie, Reiter, Eric, Crépieux, Pascale, Ritchie, David W., Azé, Jérôme, Poupon, Anne

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Functional Variants Identify Sex Specific Genes and Pathways in Alzheimer’s Disease von Lee, Kwanghyuk Danny, Bourquard, Thomas, Al‐Ramahi, Ismael, Pham, Minh, Shapiro, Dillon, Lagiesetty, Yashwanth, Soleimani, Shirin, Mota, Samantha, Wilhelm, Kevin, Samieinasab, Maryam, Kim, Youngwon, Huh, Eunna, Asmussen, Jenn, Katsonis, Panagiotis, Botas, Juan, Lichtarge, Olivier

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Biased signalling in follicle stimulating hormone action von Landomiel, Flavie, Gallay, Nathalie, Jégot, Gwenhael, Tranchant, Thibaud, Durand, Guillaume, Bourquard, Thomas, Crépieux, Pascale, Poupon, Anne, Reiter, Eric

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Evolutionary origin of bone morphogenetic protein 15 and growth and differentiation factor 9 and differential selective pressure between mono- and polyovulating species von Monestier, Olivier, Servin, Bertrand, Auclair, Sylvain, Bourquard, Thomas, Poupon, Anne, Pascal, Géraldine, Fabre, Stéphane

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Eculizumab epitope on complement C5: Progress towards a better understanding of the mechanism of action von Brachet, Guillaume, Bourquard, Thomas, Gallay, Nathalie, Reiter, Eric, Gouilleux-Gruart, Valérie, Poupon, Anne, Watier, Hervé

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Identification of risk genes for Alzheimer's disease by gene embedding von Lagisetty, Yashwanth, Bourquard, Thomas, Al-Ramahi, Ismael, Mangleburg, Carl Grant, Mota, Samantha, Soleimani, Shirin, Shulman, Joshua M, Botas, Juan, Lee, Kwanghyuk, Lichtarge, Olivier

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