Dynamics of the normal gut microbiota: A longitudinal one-year population study in Sweden von Olsson, Lisa M, Boulund, Fredrik, Nilsson, Staffan, Khan, Muhammad Tanweer, Gummesson, Anders, Fagerberg, Linn, Engstrand, Lars, Perkins, Rosie, Uhlén, Mathias, Bergström, Göran, Tremaroli, Valentina, Bäckhed, Fredrik

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Discovery of Species-unique Peptide Biomarkers of Bacterial Pathogens by Tandem Mass Spectrometry-based Proteotyping von Karlsson, Roger, Thorsell, Annika, Gomila, Margarita, Salvà-Serra, Francisco, Jakobsson, Hedvig E., Gonzales-Siles, Lucia, Jaén-Luchoro, Daniel, Skovbjerg, Susann, Fuchs, Johannes, Karlsson, Anders, Boulund, Fredrik, Johnning, Anna, Kristiansson, Erik, Moore, Edward R.B.

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Conjugative transfer of multi-drug resistance IncN plasmids from environmental waterborne bacteria to Escherichia coli von Guzman-Otazo, Jessica, Joffré, Enrique, Agramont, Jorge, Mamani, Nataniel, Jutkina, Jekaterina, Boulund, Fredrik, Hu, Yue O. O., Jumilla-Lorenz, Daphne, Farewell, Anne, Larsson, D. G. Joakim, Flach, Carl-Fredrik, Iñiguez, Volga, Sjöling, Åsa

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Effects of sampling strategy and DNA extraction on human skin microbiome investigations von Bjerre, Rie Dybboe, Hugerth, Luisa Warchavchik, Boulund, Fredrik, Seifert, Maike, Johansen, Jeanne Duus, Engstrand, Lars

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The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations von Tett, Adrian, Huang, Kun D., Asnicar, Francesco, Fehlner-Peach, Hannah, Pasolli, Edoardo, Karcher, Nicolai, Armanini, Federica, Manghi, Paolo, Bonham, Kevin, Zolfo, Moreno, De Filippis, Francesca, Magnabosco, Cara, Bonneau, Richard, Lusingu, John, Amuasi, John, Reinhard, Karl, Rattei, Thomas, Boulund, Fredrik, Engstrand, Lars, Zink, Albert, Collado, Maria Carmen, Littman, Dan R., Eibach, Daniel, Ercolini, Danilo, Rota-Stabelli, Omar, Huttenhower, Curtis, Maixner, Frank, Segata, Nicola

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Identification and reconstruction of novel antibiotic resistance genes from metagenomes von Berglund, Fanny, Österlund, Tobias, Boulund, Fredrik, Marathe, Nachiket P, Larsson, D G Joakim, Kristiansson, Erik

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No evidence for a placental microbiome in human pregnancies at term von Sterpu, Irene, Fransson, Emma, Hugerth, Luisa W., Du, Juan, Pereira, Marcela, Cheng, Liqin, Radu, Sebastian Alexandru, Calderón-Pérez, Lorena, Zha, Yinghua, Angelidou, Pia, Pennhag, Alexandra, Boulund, Fredrik, Scheynius, Annika, Engstrand, Lars, Wiberg-Itzel, Eva, Schuppe-Koistinen, Ina

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Bacterial gut microbiome differences in adults with ADHD and in children with ADHD on psychostimulant medication von Stiernborg, Miranda, Debelius, JW, Yang, Liu L., Skott, Elin, Millischer, Vincent, Giacobini, MaiBritt, Melas, Philippe A., Boulund, Fredrik, Lavebratt, Catharina

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Differences in the gut microbiome of young adults with schizophrenia spectrum disorder: using machine learning to distinguish cases from controls von Stiernborg, Miranda, Prast-Nielsen, Stefanie, Melas, Philippe A., Skott, Maria, Millischer, Vincent, Boulund, Fredrik, Forsell, Yvonne, Lavebratt, Catharina

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The gut microbiome and asthma in a Swedish twin study von Mubanga, Mwenya, Ploner, Alexander, Schuppe-Koistinen, Ina, Magnusson, Patrik K E, Boulund, Fredrik, Debelius, Justine W, Almqvist, Catarina

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Dysbiosis of the Human Oral Microbiome During the Menstrual Cycle and Vulnerability to the External Exposures of Smoking and Dietary Sugar von Bostanci, Nagihan, Krog, Maria Christine, Hugerth, Luisa W, Bashir, Zahra, Fransson, Emma, Boulund, Fredrik, Belibasakis, Georgios N, Wannerberger, Kristin, Engstrand, Lars, Nielsen, Henriette Svarre, Schuppe-Koistinen, Ina

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The protective role of commensal gut microbes and their metabolites against bacterial pathogens von Cheng, Liqin, Correia, Mário S. P., Higdon, Shawn M., Romero Garcia, Fabricio, Tsiara, Ioanna, Joffré, Enrique, Sjöling, Åsa, Boulund, Fredrik, Norin, Elisabeth Lissa, Engstrand, Lars, Globisch, Daniel, Du, Juan

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Cohort profile: the Swedish Maternal Microbiome project (SweMaMi) – assessing the dynamic associations between the microbiome and maternal and neonatal adverse events von Fransson, Emma, Gudnadottir, Unnur, Hugerth, Luisa W, Itzel, Eva Wiberg, Hamsten, Marica, Boulund, Fredrik, Pennhag, Alexandra, Du, Juan, Schuppe-Koistinen, Ina, Brusselaers, Nele, Engstrand, Lars

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Investigations of microbiota composition and neuroactive pathways in association with symptoms of stress and depression in a cohort of healthy women von Bashir, Zahra, Hugerth, Luisa W, Krog, Maria Christine, Prast-Nielsen, Stefanie, Edfeldt, Gabriella, Boulund, Fredrik, Schacht, Simon Rønnow, Tetens, Inge, Engstrand, Lars, Schuppe-Koistinen, Ina, Fransson, Emma, Nielsen, Henriette Svarre

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High Amounts of SARS-CoV-2 Precede Sickness Among Asymptomatic Health Care Workers von Dillner, Joakim, Elfström, K Miriam, Blomqvist, Jonas, Engstrand, Lars, Uhlén, Mathias, Eklund, Carina, Boulund, Fredrik, Lagheden, Camilla, Hamsten, Marica, Nordqvist-Kleppe, Sara, Seifert, Maike, Hellström, Cecilia, Olofsson, Jennie, Andersson, Eni, Falk, August Jernbom, Bergström, Sofia, Hultin, Emilie, Pin, Elisa, Pimenoff, Ville N, Hassan, Sadaf, Månberg, Anna, Nilsson, Peter, Hedhammar, My, Hober, Sophia, Mattsson, Johan, Arroyo Mühr, Laila Sara, Lundgren, Kalle Conneryd

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Novel strain of Pseudoruminococcus massiliensis possesses traits important in gut adaptation and host-microbe interactions von Hiippala, Kaisa, Khan, Imran, Ronkainen, Aki, Boulund, Fredrik, Vähä-Mäkilä, Helena, Suutarinen, Maiju, Seifert, Maike, Engstrand, Lars, Satokari, Reetta

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Transient colonizing microbes promote gut dysbiosis and functional impairment von Lee, Sunjae, Meslier, Victoria, Bidkhori, Gholamreza, Garcia-Guevara, Fernando, Etienne-Mesmin, Lucie, Clasen, Frederick, Park, Junseok, Plaza Oñate, Florian, Cai, Haizhuang, Le Chatelier, Emmanuelle, Pons, Nicolas, Pereira, Marcela, Seifert, Maike, Boulund, Fredrik, Engstrand, Lars, Lee, Doheon, Proctor, Gordon, Mardinoglu, Adil, Blanquet-Diot, Stéphanie, Moyes, David, Almeida, Mathieu, Ehrlich, S. Dusko, Uhlen, Mathias, Shoaie, Saeed

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Strategies to improve usability and preserve accuracy in biological sequence databases von Bengtsson-Palme, Johan, Boulund, Fredrik, Edström, Robert, Feizi, Amir, Johnning, Anna, Jonsson, Viktor A., Karlsson, Fredrik H., Pal, Chandan, Pereira, Mariana Buongermino, Rehammar, Anna, Sanchez, José, Sanli, Kemal, Thorell, Kaisa

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Multiomics and digital monitoring during lifestyle changes reveal independent dimensions of human biology and health von Marabita, Francesco, James, Tojo, Karhu, Anu, Virtanen, Heidi, Kettunen, Kaisa, Stenlund, Hans, Boulund, Fredrik, Hellström, Cecilia, Neiman, Maja, Mills, Robert, Perheentupa, Teemu, Laivuori, Hannele, Helkkula, Pyry, Byrne, Myles, Jokinen, Ilkka, Honko, Harri, Kallonen, Antti, Ermes, Miikka, Similä, Heidi, Lindholm, Mikko, Widén, Elisabeth, Ripatti, Samuli, Perälä-Heape, Maritta, Engstrand, Lars, Nilsson, Peter, Moritz, Thomas, Miettinen, Timo, Sallinen, Riitta, Kallioniemi, Olli

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The microbiome in reproductive health: protocol for a systems biology approach using a prospective, observational study design von Krog, Maria Christine, Madsen, Mette Elkjær, Bliddal, Sofie, Bashir, Zahra, Vexø, Laura Emilie, Hartwell, Dorthe, Hugerth, Luisa W, Fransson, Emma, Hamsten, Marica, Boulund, Fredrik, Wannerberger, Kristin, Engstrand, Lars, Schuppe-Koistinen, Ina, Nielsen, Henriette Svarre

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