Non‐reversible parallel tempering: A scalable highly parallel MCMC scheme von Syed, Saifuddin, Bouchard‐Côté, Alexandre, Deligiannidis, George, Doucet, Arnaud

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The Bouncy Particle Sampler: A Nonreversible Rejection-Free Markov Chain Monte Carlo Method von Bouchard-Côté, Alexandre, Vollmer, Sebastian J., Doucet, Arnaud

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PyClone: statistical inference of clonal population structure in cancer von Roth, Andrew, Khattra, Jaswinder, Yap, Damian, Wan, Adrian, Laks, Emma, Biele, Justina, Ha, Gavin, Aparicio, Samuel, Bouchard-Côté, Alexandre, Shah, Sohrab P

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A Poissonian Model of Indel Rate Variation for Phylogenetic Tree Inference von Zhai, Yongliang, Bouchard-côté, Alexandre

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Automated reconstruction of ancient languages using probabilistic models of sound change von Bouchard-Côté, Alexandre, Hall, David, Griffiths, Thomas L., Klein, Dan

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clonealign: statistical integration of independent single-cell RNA and DNA sequencing data from human cancers von Campbell, Kieran R, Steif, Adi, Laks, Emma, Zahn, Hans, Lai, Daniel, McPherson, Andrew, Farahani, Hossein, Kabeer, Farhia, O'Flanagan, Ciara, Biele, Justina, Brimhall, Jazmine, Wang, Beixi, Walters, Pascale, Bouchard-Côté, Alexandre, Aparicio, Samuel, Shah, Sohrab P

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Clonal genotype and population structure inference from single-cell tumor sequencing von Roth, Andrew, McPherson, Andrew, Laks, Emma, Biele, Justina, Yap, Damian, Wan, Adrian, Smith, Maia A, Nielsen, Cydney B, McAlpine, Jessica N, Aparicio, Samuel, Bouchard-Côté, Alexandre, Shah, Sohrab P

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Blang : Bayesian Declarative Modeling of General Data Structures and Inference via Algorithms Based on Distribution Continua von Bouchard-Côté, Alexandre, Chern, Kevin, Cubranic, Davor, Hosseini, Sahand, Hume, Justin, Lepur, Matteo, Ouyang, Zihui, Sgarbi, Giorgio

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Evolutionary inference via the Poisson Indel Process von Bouchard-Côté, Alexandre, Jordan, Michael I.

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Accurate determination of CRISPR-mediated gene fitness in transplantable tumours von Eirew, Peter, O’Flanagan, Ciara, Ting, Jerome, Salehi, Sohrab, Brimhall, Jazmine, Wang, Beixi, Biele, Justina, Algara, Teresa, Lee, So Ra, Hoang, Corey, Yap, Damian, McKinney, Steven, Bates, Cherie, Kong, Esther, Lai, Daniel, Beatty, Sean, Andronescu, Mirela, Zaikova, Elena, Funnell, Tyler, Ceglia, Nicholas, Chia, Stephen, Gelmon, Karen, Mar, Colin, Shah, Sohrab, Roth, Andrew, Bouchard-Côté, Alexandre, Aparicio, Samuel

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EXPONENTIAL ERGODICITY OF THE BOUNCY PARTICLE SAMPLER von Deligiannidis, George, Bouchard-Côté, Alexandre, Doucet, Arnaud

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An Annealed Sequential Monte Carlo Method for Bayesian Phylogenetics von Wang, Liangliang, Wang, Shijia, Bouchard-Côté, Alexandre

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ReMixT: clone-specific genomic structure estimation in cancer von McPherson, Andrew W, Roth, Andrew, Ha, Gavin, Chauve, Cedric, Steif, Adi, de Souza, Camila P E, Eirew, Peter, Bouchard-Côté, Alexandre, Aparicio, Sam, Sahinalp, S Cenk, Shah, Sohrab P

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A Note on Probabilistic Models over Strings: The Linear Algebra Approach von Bouchard-Côté, Alexandre

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New perspective on the benefits of the gene–environment independence in case–control studies von LUO, Hao, FREUE, Gabriela V. COHEN, ZHAO, Xin, BOUCHARD-CÔTÉ, Alexandre, BURSTYN, Igor, GUSTAFSON, Paul

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Automatic Regenerative Simulation via Non-Reversible Simulated Tempering von Biron-Lattes, Miguel, Campbell, Trevor, Bouchard-Côté, Alexandre

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RANDOMIZED HAMILTONIAN MONTE CARLO AS SCALING LIMIT OF THE BOUNCY PARTICLE SAMPLER AND DIMENSION-FREE CONVERGENCE RATES von Deligiannidis, George, Paulin, Daniel, Bouchard-Côté, Alexandre, Doucet, Arnaud

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Bayesian Phylogenetic Inference Using a Combinatorial Sequential Monte Carlo Method von Wang, Liangliang, Bouchard-Côté, Alexandre, Doucet, Arnaud

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Somatic mutation detection and classification through probabilistic integration of clonal population information von Dorri, Fatemeh, Jewell, Sean, Bouchard-Côté, Alexandre, Shah, Sohrab P.

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Interfaces of Malignant and Immunologic Clonal Dynamics in Ovarian Cancer von Zhang, Allen W., McPherson, Andrew, Milne, Katy, Kroeger, David R., Hamilton, Phineas T., Miranda, Alex, Funnell, Tyler, Little, Nicole, de Souza, Camila P.E., Laan, Sonya, LeDoux, Stacey, Cochrane, Dawn R., Lim, Jamie L.P., Yang, Winnie, Roth, Andrew, Smith, Maia A., Ho, Julie, Tse, Kane, Zeng, Thomas, Shlafman, Inna, Mayo, Michael R., Moore, Richard, Failmezger, Henrik, Heindl, Andreas, Wang, Yi Kan, Bashashati, Ali, Grewal, Diljot S., Brown, Scott D., Lai, Daniel, Wan, Adrian N.C., Nielsen, Cydney B., Huebner, Curtis, Tessier-Cloutier, Basile, Anglesio, Michael S., Bouchard-Côté, Alexandre, Yuan, Yinyin, Wasserman, Wyeth W., Gilks, C. Blake, Karnezis, Anthony N., Aparicio, Samuel, McAlpine, Jessica N., Huntsman, David G., Holt, Robert A., Nelson, Brad H., Shah, Sohrab P.

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