SARS-CoV-2 Polymorphisms and Multisystem Inflammatory Syndrome in Children von Pang, Juanita, Boshier, Florencia A. T., Alders, Nele, Dixon, Garth, Breuer, Judith

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Immune Imprinting Drives Human Norovirus Potential for Global Spread von Lindesmith, Lisa C, Boshier, Florencia A T, Brewer-Jensen, Paul D, Roy, Sunando, Costantini, Veronica, Mallory, Michael L, Zweigart, Mark, May, Samantha R, Conrad, Helen, O'Reilly, Kathleen M, Kelly, Daniel, Celma, Cristina C, Beard, Stuart, Williams, Rachel, Tutill, Helena J, Becker Dreps, Sylvia, Bucardo, Filemón, Allen, David J, Vinjé, Jan, Goldstein, Richard A, Breuer, Judith, Baric, Ralph S

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Mathematical Modeling of Within-Host, Untreated, Cytomegalovirus Infection Dynamics after Allogeneic Transplantation von Duke, Elizabeth R., Boshier, Florencia A. T., Boeckh, Michael, Schiffer, Joshua T., Cardozo-Ojeda, E. Fabian

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Emergence of genomic diversity and recurrent mutations in SARS-CoV-2 von van Dorp, Lucy, Acman, Mislav, Richard, Damien, Shaw, Liam P., Ford, Charlotte E., Ormond, Louise, Owen, Christopher J., Pang, Juanita, Tan, Cedric C.S., Boshier, Florencia A.T., Ortiz, Arturo Torres, Balloux, François

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Systematic Review and Patient‐Level Meta‐Analysis of SARS‐CoV‐2 Viral Dynamics to Model Response to Antiviral Therapies von Gastine, Silke, Pang, Juanita, Boshier, Florencia A.T., Carter, Simon J., Lonsdale, Dagan O., Cortina‐Borja, Mario, Hung, Ivan F.N., Breuer, Judy, Kloprogge, Frank, Standing, Joseph F.

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Post-Vaccination Coronavirus Disease 2019: A Case-Control Study and Genomic Analysis of 119 Breakthrough Infections in Partially Vaccinated Individuals von Baltas, Ioannis, Boshier, Florencia A T, Williams, Charlotte A, Bayzid, Nadua, Cotic, Marius, Afonso Guerra-Assunção, José, Irish-Tavares, Dianne, Haque, Tanzina, Hart, Jennifer, Roy, Sunando, Williams, Rachel, Breuer, Judith, Mahungu, Tabitha W

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Evolution of viral variants in remdesivir‐treated and untreated SARS‐CoV‐2‐infected pediatrics patients von Boshier, Florencia A. T., Pang, Juanita, Penner, Justin, Parker, Matthew, Alders, Nele, Bamford, Alasdair, Grandjean, Louis, Grunewald, Stephanie, Hatcher, James, Best, Timothy, Dalton, Caroline, Bynoe, Patricia Dyal, Frauenfelder, Claire, Köeglmeier, Jutta, Myerson, Phoebe, Roy, Sunando, Williams, Rachel, Silva, Thushan I., Goldstein, Richard A., Breuer, Judith

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The Alpha variant was not associated with excess nosocomial SARS-CoV-2 infection in a multi-centre UK hospital study von Boshier, Florencia A.T., Venturini, Cristina, Stirrup, Oliver, Guerra-Assunção, José Afonso, Alcolea-Medina, Adela, Becket, Angela H., Byott, Matthew, Charalampous, Themoula, Filipe, Ana da Silva, Frampton, Dan, Glaysher, Sharon, Khan, Tabassum, Kulasegara-Shylini, Raghavendran, Kele, Beatrix, Monahan, Irene M., Mollett, Guy, Parker, Matthew, Pelosi, Emanuela, Randell, Paul, Roy, Sunando, Taylor, Joshua F., Weller, Sophie J., Wilson-Davies, Eleri, Wade, Phillip, Williams, Rachel, Copas, Andrew J., Cutino-Moguel, Teresa, Freemantle, Nick, Hayward, Andrew C., Holmes, Alison, Hughes, Joseph, Mahungu, Tabitha W., Nebbia, Gaia, Nastouli, Eleni, Partridge, David G., Pope, Cassie F., Price, James R., Robson, Samuel C., Saeed, Kordo, Shin, Gee Yen, de Silva, Thushan I., Snell, Luke B., Thomson, Emma C., Witney, Adam A., Breuer, Judith

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Coupling quantitative systems pharmacology modelling to machine learning and artificial intelligence for drug development: its pAIns and gAIns von Folguera-Blasco, Núria, Boshier, Florencia A. T., Uatay, Aydar, Pichardo-Almarza, Cesar, Lai, Massimo, Biasetti, Jacopo, Dearden, Richard, Gibbs, Megan, Kimko, Holly

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Immune Imprinting Drives Human Norovirus Potential for Global Spread von Lindesmith, Lisa C, Boshier, Florencia AT, Brewer-Jensen, Paul D, Roy, Sunando, Costantini, Veronica, Mallory, Michael L, Zweigart, Mark, May, Samantha R, Conrad, Helen, O'Reilly, Kathleen M, Kelly, Daniel, Celma, Cristina C, Beard, Stuart, Williams, Rachel, Tutill, Helena J, Becker Dreps, Sylvia, Bucardo, Filemón, Allen, David J, Vinjé, Jan, Goldstein, Richard A, Breuer, Judith, Baric, Ralph S

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The Alpha variant was not associated with excess nosocomial SARS-CoV-2 infection in a multi-centre UK hospital study von Boshier, Florencia AT, Venturini, Cristina, Stirrup, Oliver, Guerra-Assunção, José Afonso, Alcolea-Medina, Adela, Becket, Angela H, Byott, Matthew, Charalampous, Themoula, Filipe, Ana da Silva, Frampton, Dan, Glaysher, Sharon, Khan, Tabassum, Kulasegara-Shylini, Raghavendran, Kele, Beatrix, Monahan, Irene M, Mollett, Guy, Parker, Matthew, Pelosi, Emanuela, Randell, Paul, Roy, Sunando, Taylor, Joshua F, Weller, Sophie J, Wilson-Davies, Eleri, Wade, Phillip, Williams, Rachel, Copas, Andrew J, Cutino-Moguel, Teresa, Freemantle, Nick, Hayward, Andrew C, Holmes, Alison, Hughes, Joseph, Mahungu, Tabitha W, Nebbia, Gaia, Nastouli, Eleni, Partridge, David G, Pope, Cassie F, Price, James R, Robson, Samuel C, Saeed, Kordo, Shin, Gee Yen, de Silva, Thushan I, Snell, Luke B, Thomson, Emma C, Witney, Adam A, Breuer, Judith, COG-UK HOCI Variant Substudy consortium, The COVID-19 Genomics

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Immune Imprinting Drives Human Norovirus Potential for Global Spread von Lindesmith, Lisa C, Boshier, Florencia AT, Brewer-Jensen, Paul D, Roy, Sunando, Costantini, Veronica, Mallory, Michael L, Zweigart, Mark, May, Samantha R, Conrad, Helen, O'Reilly, Kathleen M, Kelly, Daniel, Celma, Cristina C, Beard, Stuart, Williams, Rachel, Tutill, Helena J, Becker Dreps, Sylvia, Bucardo, Filemón, Allen, David J, Vinjé, Jan, Goldstein, Richard A, Breuer, Judith, Baric, Ralph S

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Evolution of viral variants in remdesivir-treated and untreated SARS-CoV-2-infected pediatrics patients von Boshier, Florencia AT, Pang, Juanita, Penner, Justin, Parker, Matthew, Alders, Nele, Bamford, Alasdair, Grandjean, Louis, Grunewald, Stephanie, Hatcher, James, Best, Timothy, Dalton, Caroline, Bynoe, Patricia Dyal, Frauenfelder, Claire, Köeglmeier, Jutta, Myerson, Phoebe, Roy, Sunando, Williams, Rachel, de Silva, Thushan I, Goldstein, Richard A, Breuer, Judith, COVID-19 Genomics UK (COG-UK) consortium

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Remdesivir induced viral RNA and subgenomic RNA suppression, and evolution of viral variants in SARS-CoV-2 infected patients von Boshier, Florencia AT, Pang, Juanita, Penner, Justin, Hughes, Joseph, Parker, Matthew, Shepherd, James, Alders, Nele, Bamford, Alasdair, Grandjean, Louis, Grunewald, Stephanie, Hatcher, James, Best, Timothy, Dalton, Caroline, Bynoe, Patricia Dyal, Frauenfelder, Claire, Köeglmeier, Jutta, Myerson, Phoebe, Roy, Sunando, Williams, Rachel, Thomson, Emma C, de Silva, Thushan I, Goldstein, Richard A, Breuer, Judith

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The Alpha variant was not associated with excess nosocomial SARS-CoV-2 infection in a multi-centre UK hospital study von Boshier, Florencia AT, Venturini, Cristina, Stirrup, Oliver, Guerra-Assunção, José Afonso, Alcolea-Medina, Adela, Becket, Angela H, Byott, Matthew, Charalampous, Themoula, Filipe, Ana da Silva, Frampton, Dan, Glaysher, Sharon, Khan, Tabassum, Kulasegara-Shylini, Raghavendran, Kele, Beatrix, Monahan, Irene M, Mollett, Guy, Parker, Matthew, Pelosi, Emanuela, Randell, Paul, Roy, Sunando, Taylor, Joshua F, Weller, Sophie J, Wilson-Davies, Eleri, Wade, Phillip, Williams, Rachel, Copas, Andrew J, Cutino-Moguel, Teresa, Freemantle, Nick, Hayward, Andrew C, Holmes, Alison, Hughes, Joseph, Mahungu, Tabitha W, Nebbia, Gaia, Nastouli, Eleni, Partridge, David G, Pope, Cassie F, Price, James R, Robson, Samuel C, Saeed, Kordo, Shin, Gee Yen, de Silva, Thushan I, Snell, Luke B, Thomson, Emma C, Witney, Adam A, Breuer, Judith, COG-UK HOCI Variant Substudy consortium, The COVID-19 Genomics UK (COG-UK) consortium

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Complementing 16S rRNA Gene Amplicon Sequencing with Total Bacterial Load To Infer Absolute Species Concentrations in the Vaginal Microbiome von Boshier, Florencia A. Tettamanti, Srinivasan, Sujatha, Lopez, Anthony, Hoffman, Noah G., Proll, Sean, Fredricks, David N., Schiffer, Joshua T.

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Mathematical modeling to reveal breakthrough mechanisms in the HIV Antibody Mediated Prevention (AMP) trials von Reeves, Daniel B., Huang, Yunda, Duke, Elizabeth R., Mayer, Bryan T., Cardozo-Ojeda, E. Fabian, Boshier, Florencia A., Swan, David A., Rolland, Morgane, Robb, Merlin L., Mascola, John R., Cohen, Myron S., Corey, Lawrence, Gilbert, Peter B., Schiffer, Joshua T.

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Substantial uneven proliferation of CD4+ T cells during recovery from acute HIV infection is sufficient to explain the observed expanded clones in the HIV reservoir von Tettamanti Boshier, Florencia A., Reeves, Daniel B., Duke, Elizabeth R., Swan, David A., Prlic, Martin, Cardozo-Ojeda, E. Fabian, Schiffer, Joshua T.

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SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men: multicentre cohort study von Stirrup, Oliver, Boshier, Florencia, Venturini, Cristina, Guerra-Assunção, José Afonso, Alcolea-Medina, Adela, Beckett, Angela, Charalampous, Themoula, da Silva Filipe, Ana, Glaysher, Sharon, Khan, Tabassum, Kulasegaran Shylini, Raghavendran, Monahan, Irene, Mollett, Guy, Pelosi, Emanuela, Randell, Paul, Roy, Sunando, Taylor, Joshua, Weller, Sophie, Wade, Phillip, Williams, Rachel, Copas, Andrew, Cutino-Moguel, Maria-Teresa, Freemantle, Nick, Hayward, Andrew C, Holmes, Alison, Hughes, Joseph, Mahungu, Tabitha, Nebbia, Gaia, Partridge, David, Pope, Cassie, Price, James, Robson, Samuel, Saeed, Kordo, de Silva, Thushan, Snell, Luke, Thomson, Emma, Witney, Adam A, Breuer, Judith, Blackstone, James, Hockey, Leanne, Marley, Georgia, Harrington, David, Riddell, Anna, Peters, Christine, Patel, Bindi, Williams, Tom G S, Batra, Rahul, Madona, Pinglawathee, Cox, Alison, Hart, Jennifer, Haque, Tanzina, Irish, Dianne, Pang, Juanita, Williams, Charlotte, Tutill, Helena, Bayzid, Nadua, Cotic, Marius, Green, Luke, Lindsey, Benjamin, State, Amy, Cope, Alison, Johnson, Katie, Angyal, Adrienn, Zhang, Peijun, Whiteley, Max, Ramalho, Marta Gallis, Christou, Stella, Louka, Stavroula, Hornsby, Hailey, Foulkes, Benjamin, Wolverson, Paige, Heffer, Joe, Smith, Nikki, Goudarzi, Salman, Fearn, Chris, Cook, Kate, Loveson, Katie, Elliott, Scott, Samaraweera, Buddhini, Silveira, Siona, Aplin, Stephen, Jeremiah, Sarah, Umpleby, Helen, Wheeler, Helen, Harvey, Matthew, Prieto, Jacqui, Laing, Kenneth, Tan, Ngee Keong, Pereira, Claudia Cardoso, Nastouli, Eleni, Houlihan, Catherine F, Frampton, Dan, Rampling, Tommy, Heaney, Judith, Shin, Gee Yen, Spyer, Moira, Bergstrom, Malin, Sanchez, Emilie, Paraskevopoulou, Stavroula M, Margaritis, Marios

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Mathematical modeling to reveal breakthrough mechanisms in the HIV Antibody Mediated Prevention von Reeves, Daniel B, Huang, Yunda, Duke, Elizabeth R, Mayer, Bryan T, Cardozo-Ojeda, E. Fabian, Boshier, Florencia A, Swan, David A, Rolland, Morgane, Robb, Merlin L, Mascola, John R, Cohen, Myron S, Corey, Lawrence, Gilbert, Peter B, Schiffer, Joshua T, De Boer, Rob J, Gallo, James

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