DeepInsight: A methodology to transform a non-image data to an image for convolution neural network architecture von Sharma, Alok, Vans, Edwin, Shigemizu, Daichi, Boroevich, Keith A., Tsunoda, Tatsuhiko

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DeepFeature: feature selection in nonimage data using convolutional neural network von Sharma, Alok, Lysenko, Artem, Boroevich, Keith A., Vans, Edwin, Tsunoda, Tatsuhiko

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DeepInsight-3D architecture for anti-cancer drug response prediction with deep-learning on multi-omics von Sharma, Alok, Lysenko, Artem, Boroevich, Keith A., Tsunoda, Tatsuhiko

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Association between high immune activity and worse prognosis in uveal melanoma and low-grade glioma in TCGA transcriptomic data von Matsuo, Hitoshi, Kamatani, Takashi, Hamba, Yu, Boroevich, Keith A, Tsunoda, Tatsuhiko

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Enhanced analysis of tabular data through Multi-representation DeepInsight von Sharma, Alok, López, Yosvany, Jia, Shangru, Lysenko, Artem, Boroevich, Keith A., Tsunoda, Tatsuhiko

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Whole-genome mutational landscape of liver cancers displaying biliary phenotype reveals hepatitis impact and molecular diversity von Fujimoto, Akihiro, Furuta, Mayuko, Shiraishi, Yuichi, Gotoh, Kunihito, Kawakami, Yoshiiku, Arihiro, Koji, Nakamura, Toru, Ueno, Masaki, Ariizumi, Shun-ichi, Hai Nguyen, Ha, Shigemizu, Daichi, Abe, Tetsuo, Boroevich, Keith A., Nakano, Kaoru, Sasaki, Aya, Kitada, Rina, Maejima, Kazihiro, Yamamoto, Yujiro, Tanaka, Hiroko, Shibuya, Tetsuo, Shibata, Tatsuhiro, Ojima, Hidenori, Shimada, Kazuaki, Hayami, Shinya, Shigekawa, Yoshinobu, Aikata, Hiroshi, Ohdan, Hideki, Marubashi, Shigeru, Yamada, Terumasa, Kubo, Michiaki, Hirano, Satoshi, Ishikawa, Osamu, Yamamoto, Masakazu, Yamaue, Hiroki, Chayama, Kazuaki, Miyano, Satoru, Tsunoda, Tatsuhiko, Nakagawa, Hidewaki

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Integrated analysis of whole genome and transcriptome sequencing reveals diverse transcriptomic aberrations driven by somatic genomic changes in liver cancers von Shiraishi, Yuichi, Fujimoto, Akihiro, Furuta, Mayuko, Tanaka, Hiroko, Chiba, Ken-ichi, Boroevich, Keith A, Abe, Tetsuo, Kawakami, Yoshiiku, Ueno, Masaki, Gotoh, Kunihito, Ariizumi, Shun-ichi, Shibuya, Tetsuo, Nakano, Kaoru, Sasaki, Aya, Maejima, Kazuhiro, Kitada, Rina, Hayami, Shinya, Shigekawa, Yoshinobu, Marubashi, Shigeru, Yamada, Terumasa, Kubo, Michiaki, Ishikawa, Osamu, Aikata, Hiroshi, Arihiro, Koji, Ohdan, Hideki, Yamamoto, Masakazu, Yamaue, Hiroki, Chayama, Kazuaki, Tsunoda, Tatsuhiko, Miyano, Satoru, Nakagawa, Hidewaki

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Performance comparison of four commercial human whole-exome capture platforms von Shigemizu, Daichi, Momozawa, Yukihide, Abe, Testuo, Morizono, Takashi, Boroevich, Keith A., Takata, Sadaaki, Ashikawa, Kyota, Kubo, Michiaki, Tsunoda, Tatsuhiko

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An integrative machine learning approach for prediction of toxicity-related drug safety von Lysenko, Artem, Sharma, Alok, Boroevich, Keith A, Tsunoda, Tatsuhiko

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Prognosis prediction model for conversion from mild cognitive impairment to Alzheimer's disease created by integrative analysis of multi-omics data von Shigemizu, Daichi, Akiyama, Shintaro, Higaki, Sayuri, Sugimoto, Taiki, Sakurai, Takashi, Boroevich, Keith A., Sharma, Alok, Tsunoda, Tatsuhiko, Ochiya, Takahiro, Niida, Shumpei, Ozaki, Kouichi

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Structural Basis and Genotype-Phenotype Correlations of INSR Mutations Causing Severe Insulin Resistance von Hosoe, Jun, Kadowaki, Hiroko, Miya, Fuyuki, Aizu, Katsuya, Kawamura, Tomoyuki, Miyata, Ichiro, Satomura, Kenichi, Ito, Takeru, Hara, Kazuo, Tanaka, Masaki, Ishiura, Hiroyuki, Tsuji, Shoji, Suzuki, Ken, Takakura, Minaka, Boroevich, Keith A, Tsunoda, Tatsuhiko, Yamauchi, Toshimasa, Shojima, Nobuhiro, Kadowaki, Takashi

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Quantification of multicellular colonization in tumor metastasis using exome‐sequencing data von Nishino, Jo, Watanabe, Shuichi, Miya, Fuyuki, Kamatani, Takashi, Sugawara, Toshitaka, Boroevich, Keith A., Tsunoda, Tatsuhiko

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The construction of risk prediction models using GWAS data and its application to a type 2 diabetes prospective cohort von Shigemizu, Daichi, Abe, Testuo, Morizono, Takashi, Johnson, Todd A, Boroevich, Keith A, Hirakawa, Yoichiro, Ninomiya, Toshiharu, Kiyohara, Yutaka, Kubo, Michiaki, Nakamura, Yusuke, Maeda, Shiro, Tsunoda, Tatsuhiko

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A comparison of machine learning classifiers for dementia with Lewy bodies using miRNA expression data von Shigemizu, Daichi, Akiyama, Shintaro, Asanomi, Yuya, Boroevich, Keith A, Sharma, Alok, Tsunoda, Tatsuhiko, Sakurai, Takashi, Ozaki, Kouichi, Ochiya, Takahiro, Niida, Shumpei

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Stepwise iterative maximum likelihood clustering approach von Sharma, Alok, Shigemizu, Daichi, Boroevich, Keith A, López, Yosvany, Kamatani, Yoichiro, Kubo, Michiaki, Tsunoda, Tatsuhiko

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Systematic analysis of mutation distribution in three dimensional protein structures identifies cancer driver genes von Fujimoto, Akihiro, Okada, Yukinori, Boroevich, Keith A., Tsunoda, Tatsuhiko, Taniguchi, Hiroaki, Nakagawa, Hidewaki

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A novel homozygous missense mutation in the SH3-binding motif of STAMBP causing microcephaly-capillary malformation syndrome von Hori, Ikumi, Miya, Fuyuki, Negishi, Yutaka, Hattori, Ayako, Ando, Naoki, Boroevich, Keith A, Okamoto, Nobuhiko, Kato, Mitsuhiro, Tsunoda, Tatsuhiko, Yamasaki, Mami, Kanemura, Yonehiro, Kosaki, Kenjiro, Saitoh, Shinji

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Risk prediction models for dementia constructed by supervised principal component analysis using miRNA expression data von Shigemizu, Daichi, Akiyama, Shintaro, Asanomi, Yuya, Boroevich, Keith A., Sharma, Alok, Tsunoda, Tatsuhiko, Matsukuma, Kana, Ichikawa, Makiko, Sudo, Hiroko, Takizawa, Satoko, Sakurai, Takashi, Ozaki, Kouichi, Ochiya, Takahiro, Niida, Shumpei

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Functional Genomics of the Cilium, a Sensory Organelle von Blacque, Oliver E., Perens, Elliot A., Boroevich, Keith A., Inglis, Peter N., Li, Chunmei, Warner, Adam, Khattra, Jaswinder, Holt, Rob A., Ou, Guangshuo, Mah, Allan K., McKay, Sheldon J., Huang, Peter, Swoboda, Peter, Jones, Steve J.M., Marra, Marco A., Baillie, David L., Moerman, Donald G., Shaham, Shai, Leroux, Michel R.

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A practical method to detect SNVs and indels from whole genome and exome sequencing data von Shigemizu, Daichi, Fujimoto, Akihiro, Akiyama, Shintaro, Abe, Tetsuo, Nakano, Kaoru, Boroevich, Keith A., Yamamoto, Yujiro, Furuta, Mayuko, Kubo, Michiaki, Nakagawa, Hidewaki, Tsunoda, Tatsuhiko

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