'True' null allele detection in microsatellite loci: a comparison of methods, assessment of difficulties and survey of possible improvements von Dąbrowski, M. J., Bornelöv, S., Kruczyk, M., Baltzer, N., Komorowski, J.

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Rule-based models of the interplay between genetic and environmental factors in childhood allergy von Bornelöv, Susanne, Sääf, Annika, Melén, Erik, Bergström, Anna, Torabi Moghadam, Behrooz, Pulkkinen, Ville, Acevedo, Nathalie, Orsmark Pietras, Christina, Ege, Markus, Braun-Fahrländer, Charlotte, Riedler, Josef, Doekes, Gert, Kabesch, Michael, van Hage, Marianne, Kere, Juha, Scheynius, Annika, Söderhäll, Cilla, Pershagen, Göran, Komorowski, Jan

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Cytosine-5 RNA methylation links protein synthesis to cell metabolism von Gkatza, NA, Castro, C, Harvey, RF, Heiß, M, Popis, MC, Blanco, S, Bornelöv, S, Sajini, AA, Gleeson, JG, Griffin, JL, West, JA, Kellner, S, Willis, AE, Dietmann, S, Frye, M

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Sequential inverse dysregulation of the RNA helicases DDX3X and DDX3Y facilitates MYC-driven lymphomagenesis von Gong, C, Krupka, JA, Gao, J, Grigoropoulos, NF, Giotopoulos, G, Asby, R, Screen, M, Usheva, Z, Cucco, F, Barrans, S, Painter, D, Zaini, NBM, Haupl, B, Bornelov, S, De Los Mozos, IR, Meng, W, Zhou, P, Blain, AE, Forde, S, Matthews, J, Tan, MGK, Burke, GAA, Sze, SK, Beer, P, Burton, C, Campbell, P, Rand, V, Turner, SD, Ule, J, Roman, E, Tooze, R, Oellerich, T, Huntly, BJ, Turner, M, Du, M-Q, Samarajiwa, SA, Hodson, DJ

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A community effort to optimize sequence-based deep learning models of gene regulation von Rafi, Abdul Muntakim, Nogina, Daria, Penzar, Dmitry, Lee, Dohoon, Lee, Danyeong, Kim, Nayeon, Kim, Sangyeup, Kim, Dohyeon, Shin, Yeojin, Kwak, Il-Youp, Meshcheryakov, Georgy, Lando, Andrey, Zinkevich, Arsenii, Kim, Byeong-Chan, Lee, Juhyun, Kang, Taein, Vaishnav, Eeshit Dhaval, Yadollahpour, Payman, Kim, Sun, Albrecht, Jake, Regev, Aviv, Gong, Wuming, Kulakovskiy, Ivan V, Meyer, Pablo, de Boer, Carl G

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A code within the genetic code von Bornelöv, Susanne

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CONCUR: quick and robust calculation of codon usage from ribosome profiling data von Frye, Michaela, Bornelöv, Susanne

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Sequence- and structure-specific cytosine-5 mRNA methylation by NSUN6 von Selmi, Tommaso, Hussain, Shobbir, Dietmann, Sabine, Heiß, Matthias, Borland, Kayla, Flad, Sophia, Carter, Jean-Michel, Dennison, Rebecca, Huang, Ya-Lin, Kellner, Stefanie, Bornelöv, Susanne, Frye, Michaela

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Loss of 5-methylcytosine alters the biogenesis of vault-derived small RNAs to coordinate epidermal differentiation von Sajini, Abdulrahim A., Choudhury, Nila Roy, Wagner, Rebecca E., Bornelöv, Susanne, Selmi, Tommaso, Spanos, Christos, Dietmann, Sabine, Rappsilber, Juri, Michlewski, Gracjan, Frye, Michaela

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The Nucleosome Remodeling and Deacetylation Complex Modulates Chromatin Structure at Sites of Active Transcription to Fine-Tune Gene Expression von Bornelöv, Susanne, Reynolds, Nicola, Xenophontos, Maria, Gharbi, Sarah, Johnstone, Ewan, Floyd, Robin, Ralser, Meryem, Signolet, Jason, Loos, Remco, Dietmann, Sabine, Bertone, Paul, Hendrich, Brian

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An evolutionarily conserved stop codon enrichment at the 5′ ends of mammalian piRNAs von Bornelöv, Susanne, Czech, Benjamin, Hannon, Gregory J.

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Codon usage optimization in pluripotent embryonic stem cells von Bornelöv, Susanne, Selmi, Tommaso, Flad, Sophia, Dietmann, Sabine, Frye, Michaela

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Complementary Activity of ETV5, RBPJ, and TCF3 Drives Formative Transition from Naive Pluripotency von Kalkan, Tüzer, Bornelöv, Susanne, Mulas, Carla, Diamanti, Evangelia, Lohoff, Tim, Ralser, Meryem, Middelkamp, Sjors, Lombard, Patrick, Nichols, Jennifer, Smith, Austin

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Pluripotent stem cells related to embryonic disc exhibit common self-renewal requirements in diverse livestock species von Kinoshita, Masaki, Kobayashi, Toshihiro, Planells, Benjamin, Klisch, Doris, Spindlow, Daniel, Masaki, Hideki, Bornelov, Susanne, Stirparo, Giuliano Giuseppe, Matsunari, Hitomi, Uchikura, Ayuko, Lamas-Toranzo, Ismael, Nichols, Jennifer, Nakauchi, Hiromitsu, Nagashima, Hiroshi, Alberio, Ramiro, Smith, Austin

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Identification of the Long-Sought Leptin in Chicken and Duck: Expression Pattern of the Highly GC-Rich Avian leptin Fits an Autocrine/Paracrine Rather Than Endocrine Function von Seroussi, Eyal, Cinnamon, Yuval, Yosefi, Sara, Genin, Olga, Smith, Julia Gage, Rafati, Nima, Bornelöv, Susanne, Andersson, Leif, Friedman-Einat, Miriam

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Cytosine-5 RNA methylation links protein synthesis to cell metabolism von Gkatza, Nikoletta A, Castro, Cecilia, Harvey, Robert F, Heiß, Matthias, Popis, Martyna C, Blanco, Sandra, Bornelöv, Susanne, Sajini, Abdulrahim A, Gleeson, Joseph G, Griffin, Julian L, West, James A, Kellner, Stefanie, Willis, Anne E, Dietmann, Sabine, Frye, Michaela

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Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus von van Lopik, Jasper, Alizada, Azad, Trapotsi, Maria-Anna, Hannon, Gregory J., Bornelöv, Susanne, Czech Nicholson, Benjamin

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Different distribution of histone modifications in genes with unidirectional and bidirectional transcription and a role of CTCF and cohesin in directing transcription von Bornelöv, Susanne, Komorowski, Jan, Wadelius, Claes

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Gene expression signatures of individual ductal carcinoma in situ lesions identify processes and biomarkers associated with progression towards invasive ductal carcinoma von Rebbeck, Clare A., Xian, Jian, Bornelöv, Susanne, Geradts, Joseph, Hobeika, Amy, Geiger, Heather, Alvarez, Jose Franco, Rozhkova, Elena, Nicholls, Ashley, Robine, Nicolas, Lyerly, Herbert K., Hannon, Gregory J.

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Correspondence on Lovell et al.: identification of chicken genes previously assumed to be evolutionarily lost von Bornelöv, Susanne, Seroussi, Eyal, Yosefi, Sara, Pendavis, Ken, Burgess, Shane C, Grabherr, Manfred, Friedman-Einat, Miriam, Andersson, Leif

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