Constraint-based models predict metabolic and associated cellular functions von Bordbar, Aarash, Monk, Jonathan M., King, Zachary A., Palsson, Bernhard O.

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Multi-omic data integration enables discovery of hidden biological regularities von Ebrahim, Ali, Brunk, Elizabeth, Tan, Justin, O'Brien, Edward J., Kim, Donghyuk, Szubin, Richard, Lerman, Joshua A., Lechner, Anna, Sastry, Anand, Bordbar, Aarash, Feist, Adam M., Palsson, Bernhard O.

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Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics von Bordbar, Aarash, Yurkovich, James T., Paglia, Giuseppe, Rolfsson, Ottar, Sigurjónsson, Ólafur E., Palsson, Bernhard O.

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Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions von Schellenberger, Jan, Lewis, Nathan E, Palsson, Bernhard Ø, Jamshidi, Neema, Bordbar, Aarash

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Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage von Thiele, Ines, Fleming, Ronan M T, Que, Richard, Bordbar, Aarash, Diep, Dinh, Palsson, Bernhard O

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Quantitative time-course metabolomics in human red blood cells reveal the temperature dependence of human metabolic networks von Yurkovich, James T., Zielinski, Daniel C., Yang, Laurence, Paglia, Giuseppe, Rolfsson, Ottar, Sigurjónsson, Ólafur E., Broddrick, Jared T., Bordbar, Aarash, Wichuk, Kristine, Brynjólfsson, Sigurður, Palsson, Sirus, Gudmundsson, Sveinn, Palsson, Bernhard O.

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Personalized Whole-Cell Kinetic Models of Metabolism for Discovery in Genomics and Pharmacodynamics von Bordbar, Aarash, McCloskey, Douglas, Zielinski, Daniel C., Sonnenschein, Nikolaus, Jamshidi, Neema, Palsson, Bernhard O.

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A systems approach to predict oncometabolites via context-specific genome-scale metabolic networks von Nam, Hojung, Campodonico, Miguel, Bordbar, Aarash, Hyduke, Daniel R, Kim, Sangwoo, Zielinski, Daniel C, Palsson, Bernhard O

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Pharmacogenomic and clinical data link non-pharmacokinetic metabolic dysregulation to drug side effect pathogenesis von Zielinski, Daniel C., Filipp, Fabian V., Bordbar, Aarash, Jensen, Kasper, Smith, Jeffrey W., Herrgard, Markus J., Mo, Monica L., Palsson, Bernhard O.

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Model‐driven multi‐omic data analysis elucidates metabolic immunomodulators of macrophage activation von Bordbar, Aarash, Mo, Monica L, Nakayasu, Ernesto S, Schrimpe‐Rutledge, Alexandra C, Kim, Young‐Mo, Metz, Thomas O, Jones, Marcus B, Frank, Bryan C, Smith, Richard D, Peterson, Scott N, Hyduke, Daniel R, Adkins, Joshua N, Palsson, Bernhard O

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A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism von Mih, Nathan, Brunk, Elizabeth, Bordbar, Aarash, Palsson, Bernhard O

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Blood donor exposome and impact of common drugs on red blood cell metabolism von Nemkov, Travis, Stefanoni, Davide, Bordbar, Aarash, Issaian, Aaron, Palsson, Bernhard O., Dumont, Larry J., Hay, Ariel, Song, Anren, Xia, Yang, Redzic, Jasmina S., Eisenmesser, Elan Z., Zimring, James C., Kleinman, Steve, Hansen, Kirk C., Busch, Michael P., D'Alessandro, Angelo

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Minimal metabolic pathway structure is consistent with associated biomolecular interactions von Bordbar, Aarash, Nagarajan, Harish, Lewis, Nathan E, Latif, Haythem, Ebrahim, Ali, Federowicz, Stephen, Schellenberger, Jan, Palsson, Bernhard O

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Interpreting the deluge of omics data: new approaches offer new possibilities von Bordbar, Aarash

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Citrate metabolism in red blood cells stored in additive solution‐3 von D'Alessandro, Angelo, Nemkov, Travis, Yoshida, Tatsuro, Bordbar, Aarash, Palsson, Bernhard O., Hansen, Kirk C.

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Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0 von Heirendt, Laurent, Arreckx, Sylvain, Pfau, Thomas, Mendoza, Sebastián N., Richelle, Anne, Heinken, Almut, Haraldsdóttir, Hulda S., Wachowiak, Jacek, Keating, Sarah M., Vlasov, Vanja, Magnusdóttir, Stefania, Ng, Chiam Yu, Preciat, German, Žagare, Alise, Chan, Siu H. J., Aurich, Maike K., Clancy, Catherine M., Modamio, Jennifer, Sauls, John T., Noronha, Alberto, Bordbar, Aarash, Cousins, Benjamin, El Assal, Diana C., Valcarcel, Luis V., Apaolaza, Iñigo, Ghaderi, Susan, Ahookhosh, Masoud, Ben Guebila, Marouen, Kostromins, Andrejs, Sompairac, Nicolas, Le, Hoai M., Ma, Ding, Sun, Yuekai, Wang, Lin, Yurkovich, James T., Oliveira, Miguel A. P., Vuong, Phan T., El Assal, Lemmer P., Kuperstein, Inna, Zinovyev, Andrei, Hinton, H. Scott, Bryant, William A., Aragón Artacho, Francisco J., Planes, Francisco J., Stalidzans, Egils, Maass, Alejandro, Vempala, Santosh, Hucka, Michael, Saunders, Michael A., Maranas, Costas D., Lewis, Nathan E., Sauter, Thomas, Palsson, Bernhard Ø., Thiele, Ines, Fleming, Ronan M. T.

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Biomarkers defining the metabolic age of red blood cells during cold storage von Paglia, Giuseppe, D'Alessandro, Angelo, Rolfsson, Óttar, Sigurjónsson, Ólafur E., Bordbar, Aarash, Palsson, Sirus, Nemkov, Travis, Hansen, Kirk C., Gudmundsson, Sveinn, Palsson, Bernhard O.

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Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0 von Schellenberger, Jan, Que, Richard, Fleming, Ronan M T, Thiele, Ines, Orth, Jeffrey D, Feist, Adam M, Zielinski, Daniel C, Bordbar, Aarash, Lewis, Nathan E, Rahmanian, Sorena, Kang, Joseph, Hyduke, Daniel R, Palsson, Bernhard Ø

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Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome von Lewis, Nathan E, Liu, Xin, Li, Yuxiang, Nagarajan, Harish, Yerganian, George, O'Brien, Edward, Bordbar, Aarash, Roth, Anne M, Rosenbloom, Jeffrey, Bian, Chao, Xie, Min, Chen, Wenbin, Li, Ning, Baycin-Hizal, Deniz, Latif, Haythem, Forster, Jochen, Betenbaugh, Michael J, Famili, Iman, Xu, Xun, Wang, Jun, Palsson, Bernhard O

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Systems biology analysis of drivers underlying hallmarks of cancer cell metabolism von Zielinski, Daniel C., Jamshidi, Neema, Corbett, Austin J., Bordbar, Aarash, Thomas, Alex, Palsson, Bernhard O.

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