Kimma: flexible linear mixed effects modeling with kinship covariance for RNA-seq data von Dill-McFarland, Kimberly A, Mitchell, Kiana, Batchu, Sashank, Segnitz, Richard Max, Benson, Basilin, Janczyk, Tomasz, Cox, Madison S, Mayanja-Kizza, Harriet, Boom, William Henry, Benchek, Penelope, Stein, Catherine M, Hawn, Thomas R, Altman, Matthew C

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Bacterial Factors That Predict Relapse after Tuberculosis Therapy von Colangeli, Roberto, Jedrey, Hannah, Kim, Soyeon, Connell, Roy, Ma, Shuyi, Chippada Venkata, Uma D, Chakravorty, Soumitesh, Gupta, Aditi, Sizemore, Erin E, Diem, Lois, Sherman, David R, Okwera, Alphonse, Dietze, Reynaldo, Boom, W. Henry, Johnson, John L, Mac Kenzie, William R, Alland, David

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Four-Gene Pan-African Blood Signature Predicts Progression to Tuberculosis von Suliman, Sara, Thompson, Ethan G, Sutherland, Jayne, Weiner, 3rd, January, Ota, Martin O C, Shankar, Smitha, Penn-Nicholson, Adam, Thiel, Bonnie, Erasmus, Mzwandile, Maertzdorf, Jeroen, Duffy, Fergal J, Hill, Philip C, Hughes, E Jane, Stanley, Kim, Downing, Katrina, Fisher, Michelle L, Valvo, Joe, Parida, Shreemanta K, van der Spuy, Gian, Tromp, Gerard, Adetifa, Ifedayo M O, Donkor, Simon, Howe, Rawleigh, Mayanja-Kizza, Harriet, Boom, W Henry, Dockrell, Hazel M, Ottenhoff, Tom H M, Hatherill, Mark, Aderem, Alan, Hanekom, Willem A, Scriba, Thomas J, Kaufmann, Stefan H E, Zak, Daniel E, Walzl, Gerhard

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Tuberculosis severity associates with variants and eQTLs related to vascular biology and infection-induced inflammation von McHenry, Michael L, Simmons, Jason, Hong, Hyejeong, Malone, LaShaunda L, Mayanja-Kizza, Harriet, Bush, William S, Boom, W Henry, Hawn, Thomas R, Williams, Scott M, Stein, Catherine M

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A Locus at 5q33.3 Confers Resistance to Tuberculosis in Highly Susceptible Individuals von Sobota, Rafal S., Stein, Catherine M., Kodaman, Nuri, Scheinfeldt, Laura B., Maro, Isaac, Wieland-Alter, Wendy, Igo, Robert P., Magohe, Albert, Malone, LaShaunda L., Chervenak, Keith, Hall, Noemi B., Modongo, Chawangwa, Zetola, Nicola, Matee, Mecky, Joloba, Moses, Froment, Alain, Nyambo, Thomas B., Moore, Jason H., Scott, William K., Lahey, Timothy, Boom, W. Henry, von Reyn, C. Fordham, Tishkoff, Sarah A., Sirugo, Giorgio, Williams, Scott M.

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A chromosome 5q31.1 locus associates with tuberculin skin test reactivity in HIV-positive individuals from tuberculosis hyper-endemic regions in east Africa von Sobota, Rafal S, Stein, Catherine M, Kodaman, Nuri, Maro, Isaac, Wieland-Alter, Wendy, Igo, Jr, Robert P, Magohe, Albert, Malone, LaShaunda L, Chervenak, Keith, Hall, Noemi B, Matee, Mecky, Mayanja-Kizza, Harriet, Joloba, Moses, Moore, Jason H, Scott, William K, Lahey, Timothy, Boom, W Henry, von Reyn, C Fordham, Williams, Scott M, Sirugo, Giorgio

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Immune cells in bronchoalveolar lavage fluid of Ugandan adults who resist versus those who develop latent Mycobacterium tuberculosis infection von Thiel, Bonnie A, Worodria, William, Nalukwago, Sophie, Nsereko, Mary, Sanyu, Ingvar, Rejani, Lalitha, Zawedde, Josephine, Canaday, David H, Stein, Catherine M, Chervenak, Keith A, Malone, LaShaunda L, Kiyemba, Ronald, Silver, Richard F, Johnson, John L, Mayanja-Kizza, Harriet, Boom, W Henry

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Inhibiting Mycobacterium abscessus Cell Wall Synthesis: Using a Novel Diazabicyclooctane β-Lactamase Inhibitor To Augment β-Lactam Action von Dousa, Khalid M, Nguyen, David C, Kurz, Sebastian G, Taracila, Magdalena A, Bethel, Christopher R, Schinabeck, William, Kreiswirth, Barry N, Brown, Sheldon T, Boom, W Henry, Hotchkiss, Richard S, Remy, Kenneth E, Jacono, Frank J, Daley, Charles L, Holland, Steven M, Miller, Alita A, Bonomo, Robert A

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Methylome-wide Analysis Reveals Epigenetic Marks Associated With Resistance to Tuberculosis in Human Immunodeficiency Virus–Infected Individuals From East Africa von Stein, Catherine M, Benchek, Penelope, Bartlett, Jacquelaine, Igo, Robert P, Sobota, Rafal S, Chervenak, Keith, Mayanja-Kizza, Harriet, von Reyn, C Fordham, Lahey, Timothy, Bush, William S, Boom, W Henry, Scott, William K, Marsit, Carmen, Sirugo, Giorgio, Williams, Scott M

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Tuberculosis Biomarker and Surrogate Endpoint Research Roadmap von NAHID, Payam, SAUKKONEN, Jussi, CAMPBELL, Thomas B, EISENACH, Kathleen D, HAFNER, Richard, LENNOX, Jeffrey L, MAKHENE, Mamodikoe, SWINDELLS, Susan, ELSA VILLARINO, M, WEINER, Marc, BENSON, Constance, BURMAN, William, MAC KENZIE, William R, JOHNSON, John L, PHILLIPS, Patrick P. J, ANDERSEN, Janet, BLIVEN-SIZEMORE, Erin, BELISLE, John T, HENRY BOOM, W, LUETKEMEYER, Annie

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Interaction between M. tuberculosis Lineage and Human Genetic Variants Reveals Novel Pathway Associations with Severity of TB von McHenry, Michael L, Wampande, Eddie M, Joloba, Moses L, Malone, LaShaunda L, Mayanja-Kizza, Harriet, Bush, William S, Boom, W Henry, Williams, Scott M, Stein, Catherine M

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Fine-mapping analysis of a chromosome 2 region linked to resistance to Mycobacterium tuberculosis infection in Uganda reveals potential regulatory variants von Igo, Robert P., Hall, Noémi B., Malone, LaShaunda L., Hall, Jacob B., Truitt, Barbara, Qiu, Feiyou, Tao, Li, Mupere, Ezekiel, Schnell, Audrey, Hawn, Thomas R., Bush, William S., Joloba, Moses, Boom, W. Henry, Stein, Catherine M.

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Metabolite changes in blood predict the onset of tuberculosis von Weiner, January, Maertzdorf, Jeroen, Sutherland, Jayne S., Duffy, Fergal J., Thompson, Ethan, Suliman, Sara, McEwen, Gayle, Thiel, Bonnie, Parida, Shreemanta K., Zyla, Joanna, Hanekom, Willem A., Mohney, Robert P., Boom, W. Henry, Mayanja-Kizza, Harriet, Howe, Rawleigh, Dockrell, Hazel M., Ottenhoff, Tom H. M., Scriba, Thomas J., Zak, Daniel E., Walzl, Gerhard, Kaufmann, Stefan H. E.

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RISK6, a 6-gene transcriptomic signature of TB disease risk, diagnosis and treatment response von Penn-Nicholson, Adam, Mbandi, Stanley Kimbung, Thompson, Ethan, Mendelsohn, Simon C., Suliman, Sara, Chegou, Novel N., Malherbe, Stephanus T., Darboe, Fatoumatta, Erasmus, Mzwandile, Hanekom, Willem A., Bilek, Nicole, Fisher, Michelle, Kaufmann, Stefan H. E., Winter, Jill, Murphy, Melissa, Wood, Robin, Morrow, Carl, Van Rhijn, Ildiko, Moody, Branch, Murray, Megan, Andrade, Bruno B., Sterling, Timothy R., Sutherland, Jayne, Naidoo, Kogieleum, Padayatchi, Nesri, Walzl, Gerhard, Hatherill, Mark, Zak, Daniel, Scriba, Thomas J.

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T cell receptor repertoires associated with control and disease progression following Mycobacterium tuberculosis infection von Musvosvi, Munyaradzi, Huang, Huang, Wang, Chunlin, Xia, Qiong, Rozot, Virginie, Krishnan, Akshaya, Acs, Peter, Cheruku, Abhilasha, Obermoser, Gerlinde, Leslie, Alasdair, Behar, Samuel M., Hanekom, Willem A., Bilek, Nicole, Fisher, Michelle, Kaufmann, Stefan H. E., Walzl, Gerhard, Hatherill, Mark, Davis, Mark M., Scriba, Thomas J.

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Discovery and validation of a prognostic proteomic signature for tuberculosis progression: A prospective cohort study von Penn-Nicholson, Adam, Hraha, Thomas, Thompson, Ethan G, Sterling, David, Mbandi, Stanley Kimbung, Wall, Kirsten M, Fisher, Michelle, Suliman, Sara, Shankar, Smitha, Hanekom, Willem A, Janjic, Nebojsa, Hatherill, Mark, Kaufmann, Stefan H E, Sutherland, Jayne, Walzl, Gerhard, De Groote, Mary Ann, Ochsner, Urs, Zak, Daniel E, Scriba, Thomas J

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Analysis of host responses to Mycobacterium tuberculosis antigens in a multi-site study of subjects with different TB and HIV infection states in sub-Saharan Africa von Sutherland, Jayne S, Lalor, Maeve K, Black, Gillian F, Ambrose, Lyn R, Loxton, Andre G, Chegou, Novel N, Kassa, Desta, Mihret, Adane, Howe, Rawleigh, Mayanja-Kizza, Harriet, Gomez, Marie P, Donkor, Simon, Franken, Kees, Hanekom, Willem, Klein, Michel R, Parida, Shreemanta K, Boom, W Henry, Thiel, Bonnie A, Crampin, Amelia C, Ota, Martin, Walzl, Gerhard, Ottenhoff, Tom H M, Dockrell, Hazel M, Kaufmann, Stefan H E

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Neutrophil degranulation, NETosis and platelet degranulation pathway genes are co-induced in whole blood up to six months before tuberculosis diagnosis von Meier, Stuart, Seddon, James A, Maasdorp, Elizna, Kleynhans, Léanie, du Plessis, Nelita, Loxton, Andre G, Malherbe, Stephanus T, Zak, Daniel E, Thompson, Ethan, Duffy, Fergal J, Kaufmann, Stefan H E, Ottenhoff, Tom H M, Scriba, Thomas J, Suliman, Sara, Sutherland, Jayne S, Winter, Jill, Kuivaniemi, Helena, Walzl, Gerhard, Tromp, Gerard

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Genomics of Human Pulmonary Tuberculosis: from Genes to Pathways von Stein, Catherine M., Sausville, Lindsay, Wejse, Christian, Sobota, Rafal S., Zetola, Nicola M., Hill, Philip C., Boom, W. Henry, Scott, William K., Sirugo, Giorgio, Williams, Scott M.

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Mycobacteria lacking the RD1 region do not induce necrosis in the lungs of mice lacking interferon‐γ von Junqueira‐Kipnis, Ana Paula, Basaraba, Randall J., Gruppo, Veronica, Palanisamy, Gopinath, Turner, Oliver C., Hsu, Tsungda, Jacobs, William R., Fulton, Scott A., Reba, Scott M., Boom, W. Henry, Orme, Ian M.

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