Integrative Modelling of Biomolecular Complexes von Koukos, P.I., Bonvin, A.M.J.J.

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The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes von van Zundert, G.C.P., Rodrigues, J.P.G.L.M., Trellet, M., Schmitz, C., Kastritis, P.L., Karaca, E., Melquiond, A.S.J., van Dijk, M., de Vries, S.J., Bonvin, A.M.J.J.

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Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2 von Kurkcuoglu, Zeynep, Koukos, Panagiotis I., Citro, Nevia, Trellet, Mikael E., Rodrigues, J. P. G. L. M., Moreira, Irina S., Roel-Touris, Jorge, Melquiond, Adrien S. J., Geng, Cunliang, Schaarschmidt, Jörg, Xue, Li C., Vangone, Anna, Bonvin, A. M. J. J.

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DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes von van Zundert, G C P, Bonvin, A M J J

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The DisVis and PowerFit Web Servers: Explorative and Integrative Modeling of Biomolecular Complexes von van Zundert, G.C.P., Trellet, M., Schaarschmidt, J., Kurkcuoglu, Z., David, M., Verlato, M., Rosato, A., Bonvin, A.M.J.J.

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Sense and simplicity in HADDOCK scoring: Lessons from CASP‐CAPRI round 1 von Vangone, A., Rodrigues, J. P. G. L. M., Xue, L. C., van Zundert, G. C. P., Geng, C., Kurkcuoglu, Z., Nellen, M., Narasimhan, S., Karaca, E., van Dijk, M., Melquiond, A. S. J., Visscher, K. M., Trellet, M., Kastritis, P. L., Bonvin, A. M. J. J.

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Analysis of nanobody paratopes reveals greater diversity than classical antibodies von Mitchell, Laura S, Colwell, Lucy J

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Defining the limits and reliability of rigid-body fitting in cryo-EM maps using multi-scale image pyramids von van Zundert, G.C.P., Bonvin, A.M.J.J.

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Two-rung Model of a Left-handed β-Helix for Prions Explains Species Barrier and Strain Variation in Transmissible Spongiform Encephalopathies von Langedijk, J.P.M., Fuentes, G., Boshuizen, R., Bonvin, A.M.J.J.

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INDIGO-DataCloud: a Platform to Facilitate Seamless Access to E-Infrastructures von Salomoni, D., Campos, I., Gaido, L., de Lucas, J. Marco, Solagna, P., Gomes, J., Matyska, L., Fuhrman, P., Hardt, M., Donvito, G., Dutka, L., Plociennik, M., Barbera, R., Blanquer, I., Ceccanti, A., Cetinic, E., David, M., Duma, C., López-García, A., Moltó, G., Orviz, P., Sustr, Z., Viljoen, M., Aguilar, F., Alves, L., Antonacci, M., Antonelli, L. A., Bagnasco, S., Bonvin, A. M. J. J., Bruno, R., Chen, Y., Costa, A., Davidovic, D., Ertl, B., Fargetta, M., Fiore, S., Gallozzi, S., Kurkcuoglu, Z., Lloret, L., Martins, J., Nuzzo, A., Nassisi, P., Palazzo, C., Pina, J., Sciacca, E., Spiga, D., Tangaro, M., Urbaniak, M., Vallero, S., Wegh, B., Zaccolo, V., Zambelli, F., Zok, T.

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Data-driven docking: HADDOCK's adventures in CAPRI von van Dijk, A. D. J., de Vries, S. J., Dominguez, C., Chen, H., Zhou, H.-X., Bonvin, A. M. J. J.

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Human Papillomavirus Type 18 E6 Protein Binds the Cellular PDZ Protein TIP-2/GIPC, Which Is Involved in Transforming Growth Factor β Signaling and Triggers Its Degradation by the P... von Favre-Bonvin, Arnaud, Reynaud, Caroline, Kretz-Remy, Carole, Jalinot, Pierre

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Sense and Simplicity in HADDOCK Scoring: Lessons from CASP‐CAPRI (page 418) von Vangone, A., Rodrigues, J. P. G. L. M., Xue, L. C., van Zundert, G. C. P., Geng, C., Kurkcuoglu, Z., Nellen, M., Narasimhan, S., Karaca, E., van Dijk, M., Melquiond, A. S. J., Visscher, K. M., Trellet, M., Kastritis, P. L., Bonvin, A. M. J. J.

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Ubiquitylated Tax targets and binds the IKK signalosome at the centrosome von Kfoury, Y, Nasr, R, Favre-Bonvin, A, El-Sabban, M, Renault, N, Giron, M-L, Setterblad, N, Hajj, H El, Chiari, E, Mikati, A G, Hermine, O, Saib, A, de Thé, H, Pique, C, Bazarbachi, A

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3D-DART: a DNA structure modelling server von van Dijk, Marc, Bonvin, Alexandre M. J. J.

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A comparative assessment of small-head metal-on-metal and ceramic-on-polyethylene total hip replacement von Lübbeke, A, Gonzalez, A, Garavaglia, G, Roussos, C, Bonvin, A, Stern, R, Peter, R, Hoffmeyer, P

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IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods von Vallat, Brinda, Webb, Benjamin M., Westbrook, John D., Goddard, Thomas D., Hanke, Christian A., Graziadei, Andrea, Peisach, Ezra, Zalevsky, Arthur, Sagendorf, Jared, Tangmunarunkit, Hongsuda, Voinea, Serban, Sekharan, Monica, Yu, Jian, Bonvin, Alexander A.M.J.J., DiMaio, Frank, Hummer, Gerhard, Meiler, Jens, Tajkhorshid, Emad, Ferrin, Thomas E., Lawson, Catherine L., Leitner, Alexander, Rappsilber, Juri, Seidel, Claus A.M., Jeffries, Cy M., Burley, Stephen K., Hoch, Jeffrey C., Kurisu, Genji, Morris, Kyle, Patwardhan, Ardan, Velankar, Sameer, Schwede, Torsten, Trewhella, Jill, Kesselman, Carl, Berman, Helen M., Sali, Andrej

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Solution structure and DNA-binding properties of the C-terminal domain of UvrC from E.coli von Singh, S, Folkers, G. E., Bonvin, A. M. J. J., Boelens, R, Wechselberger, R, Niztayev, A, Kaptein, R

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Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures von Berman, Helen M., Adams, Paul D., Bonvin, Alexandre A., Burley, Stephen K., Carragher, Bridget, Chiu, Wah, DiMaio, Frank, Ferrin, Thomas E., Gabanyi, Margaret J., Goddard, Thomas D., Griffin, Patrick R., Haas, Juergen, Hanke, Christian A., Hoch, Jeffrey C., Hummer, Gerhard, Kurisu, Genji, Lawson, Catherine L., Leitner, Alexander, Markley, John L., Meiler, Jens, Montelione, Gaetano T., Phillips, George N., Prisner, Thomas, Rappsilber, Juri, Schriemer, David C., Schwede, Torsten, Seidel, Claus A.M., Strutzenberg, Timothy S., Svergun, Dmitri I., Tajkhorshid, Emad, Trewhella, Jill, Vallat, Brinda, Velankar, Sameer, Vuister, Geerten W., Webb, Benjamin, Westbrook, John D., White, Kate L., Sali, Andrej

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Early versus Later Anticoagulation for Stroke with Atrial Fibrillation von Fischer, Urs, Koga, Masatoshi, Strbian, Daniel, Branca, Mattia, Abend, Stefanie, Trelle, Sven, Paciaroni, Maurizio, Thomalla, Götz, Michel, Patrik, Nedeltchev, Krassen, Bonati, Leo H., Ntaios, George, Gattringer, Thomas, Sandset, Else-Charlotte, Kelly, Peter, Lemmens, Robin, Sylaja, P.N., Aguiar de Sousa, Diana, Bornstein, Natan M., Gdovinova, Zuzana, Yoshimoto, Takeshi, Tiainen, Marjaana, Thomas, Helen, Krishnan, Manju, Shim, Gek C., Gumbinger, Christoph, Vehoff, Jochen, Zhang, Liqun, Matsuzono, Kosuke, Kristoffersen, Espen, Desfontaines, Philippe, Vanacker, Peter, Alonso, Angelika, Yakushiji, Yusuke, Kulyk, Caterina, Hemelsoet, Dimitri, Poli, Sven, Paiva Nunes, Ana, Caracciolo, Nicoletta, Slade, Peter, Demeestere, Jelle, Salerno, Alexander, Kneihsl, Markus, Kahles, Timo, Giudici, Daria, Tanaka, Kanta, Räty, Silja, Hidalgo, Rea, Werring, David J., Göldlin, Martina, Arnold, Marcel, Ferrari, Cecilia, Beyeler, Seraina, Fung, Christian, Weder, Bruno J., Tatlisumak, Turgut, Fenzl, Sabine, Rezny-Kasprzak, Beata, Hakim, Arsany, Salanti, Georgia, Bassetti, Claudio, Gralla, Jan, Seiffge, David J., Horvath, Thomas, Dawson, Jesse

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