Discovery and functional analysis of lncRNAs: Methodologies to investigate an uncharacterized transcriptome von Kashi, Kaori, Henderson, Lindsey, Bonetti, Alessandro, Carninci, Piero

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Recombination of repeat elements generates somatic complexity in human genomes von Pascarella, Giovanni, Hon, Chung Chau, Hashimoto, Kosuke, Busch, Annika, Luginbühl, Joachim, Parr, Callum, Hin Yip, Wing, Abe, Kazumi, Kratz, Anton, Bonetti, Alessandro, Agostini, Federico, Severin, Jessica, Murayama, Shigeo, Suzuki, Yutaka, Gustincich, Stefano, Frith, Martin, Carninci, Piero

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FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs von Abugessaisa, Imad, Ramilowski, Jordan A, Lizio, Marina, Severin, Jesicca, Hasegawa, Akira, Harshbarger, Jayson, Kondo, Atsushi, Noguchi, Shuhei, Yip, Chi Wai, Ooi, Jasmine Li Ching, Tagami, Michihira, Hori, Fumi, Agrawal, Saumya, Hon, Chung Chau, Cardon, Melissa, Ikeda, Shuya, Ono, Hiromasa, Bono, Hidemasa, Kato, Masaki, Hashimoto, Kosuke, Bonetti, Alessandro, Kato, Masaki, Kobayashi, Norio, Shin, Jay, de Hoon, Michiel, Hayashizaki, Yoshihide, Carninci, Piero, Kawaji, Hideya, Kasukawa, Takeya

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Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance von Fort, Alexandre, Hashimoto, Kosuke, Yamada, Daisuke, Salimullah, Md, Keya, Chaman A, Saxena, Alka, Bonetti, Alessandro, Voineagu, Irina, Bertin, Nicolas, Kratz, Anton, Noro, Yukihiko, Wong, Chee-Hong, de Hoon, Michiel, Andersson, Robin, Sandelin, Albin, Suzuki, Harukazu, Wei, Chia-Lin, Koseki, Haruhiko, Hasegawa, Yuki, Forrest, Alistair R R, Carninci, Piero

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Tissue pharmacokinetics of antisense oligonucleotides von Bäckström, Erica, Bonetti, Alessandro, Johnsson, Per, Öhlin, Stefan, Dahlén, Anders, Andersson, Patrik, Andersson, Shalini, Gennemark, Peter

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CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors von Hashimoto, Kosuke, Suzuki, Ana Maria, Dos Santos, Alexandre, Desterke, Christophe, Collino, Agnese, Ghisletti, Serena, Braun, Emilie, Bonetti, Alessandro, Fort, Alexandre, Qin, Xian-Yang, Radaelli, Enrico, Kaczkowski, Bogumil, Forrest, Alistair R R, Kojima, Soichi, Samuel, Didier, Natoli, Gioacchino, Buendia, Marie Annick, Faivre, Jamila, Carninci, Piero

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Characterization of novel transcripts of human papillomavirus type 16 using cap analysis gene expression technology von Taguchi, Ayumi, Nagasaka, Kazunori, Kawana, Kei, Hashimoto, Kosuke, Kusumoto-Matsuo, Rika, Plessy, Charles, Thomas, Miranda, Nakamura, Hiroe, Bonetti, Alessandro, Oda, Katsutoshi, Kukimoto, Iwao, Carninci, Piero, Banks, Lawrence, Osuga, Yutaka, Fujii, Tomoyuki

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From bench to bedside: The long journey of long non-coding RNAs von Bonetti, Alessandro, Carninci, Piero

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Birth, coming of age and death: The intriguing life of long noncoding RNAs von Samudyata, Castelo-Branco, Gonçalo, Bonetti, Alessandro

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Chemical modification patterns for microRNA therapeutic mimics: a structure-activity relationship (SAR) case-study on miR-200c von Garreau, Marion, Weidner, Julie, Hamilton, Russell, Kolosionek, Ewa, Toki, Naoko, Stavenhagen, Kathrin, Paris, Clément, Bonetti, Alessandro, Czechtizky, Werngard, Gnerlich, Felix, Rydzik, Anna

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Analysis of Enhancer–Promoter Interactions using CAGE and RADICL-Seq Technologies von Bonetti, Alessandro, Kwon, Andrew Tae-Jun, Arner, Erik, Carninci, Piero

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The New Frontier of Functional Genomics: From Chromatin Architecture and Noncoding RNAs to Therapeutic Targets von Papanicolaou, Natali, Bonetti, Alessandro

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Dielectrophoretic Assembly of High-Density Arrays of Individual Graphene Devices for Rapid Screening von Vijayaraghavan, Aravind, Sciascia, Calogero, Dehm, Simone, Lombardo, Antonio, Bonetti, Alessandro, Ferrari, Andrea C, Krupke, Ralph

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A universal model of RNA.DNA:DNA triplex formation accurately predicts genome-wide RNA-DNA interactions von Warwick, Timothy, Seredinski, Sandra, Krause, Nina M, Bains, Jasleen Kaur, Althaus, Lara, Oo, James A, Bonetti, Alessandro, Dueck, Anne, Engelhardt, Stefan, Schwalbe, Harald, Leisegang, Matthias S, Schulz, Marcel H, Brandes, Ralf P

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Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs von de Hoon, Michiel, Bonetti, Alessandro, Plessy, Charles, Ando, Yoshinari, Hon, Chung-Chau, Ishizu, Yuri, Itoh, Masayoshi, Kato, Sachi, Lin, Dongyan, Maekawa, Sho, Murata, Mitsuyoshi, Nishiyori, Hiromi, Shin, Jay W, Stolte, Jens, Suzuki, Ana Maria, Tagami, Michihira, Takahashi, Hazuki, Thongjuea, Supat, Forrest, Alistair R R, Hayashizaki, Yoshihide, Kere, Juha, Carninci, Piero

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RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions (vol 11, 1018, 2020) von Bonetti, Alessandro, Agostini, Federico, Suzuki, Ana Maria, Hashimoto, Kosuke, Pascarella, Giovanni, Gimenez, Juliette, Roos, Leonie, Nash, Alex J., Ghilotti, Marco, Cameron, Christopher J. F., Valentine, Matthew, Medvedeva, Yulia A., Noguchi, Shuhei, Agirre, Eneritz, Kashi, Kaori, Samudyata, Luginbuehl, Joachim, Cazzoli, Riccardo, Agrawal, Saumya, Luscombe, Nicholas M., Blanchette, Mathieu, Kasukawa, Takeya, de Hoon, Michiel, Arner, Erik, Lenhard, Boris, Plessy, Charles, Castelo-Branco, Goncalo, Orlando, Valerio, Carninci, Piero

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Structure by Sequencing: Discovery of Hidden Messages in the Noncoding RNA Fraction von Bonetti, Alessandro, Carninci, Piero

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Comparison of Routing Protocols and Communication Interfaces for the Implementation of Collision Avoidance Capabilities in Fleets of Industrial Mobile Robots von Bonetti, Alessandro, Sabattini, Lorenzo

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Pre-sleep arousal and sleep quality during the COVID-19 lockdown in Italy von Gorgoni, Maurizio, Scarpelli, Serena, Mangiaruga, Anastasia, Alfonsi, Valentina, Bonsignore, Maria R., Fanfulla, Francesco, Ferini-Strambi, Luigi, Nobili, Lino, Plazzi, Giuseppe, De Gennaro, Luigi, Arnaldi, Dario, Bonanni, Enrica, Bonetti, Giulio Alessandro, Castronovo, Cinzia, Maestri, Michelangelo, Garbarino, Sergio, Guarnieri, Biancamaria, Manni, Raffaele, Palagini, Laura, Puligheddu, Monica, Ferri, Raffaele, Silvani, Alessandro, Vicini, Claudio

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Interferon regulatory factor 5 (IRF5) gene variants are associated with multiple sclerosis in three distinct populations von Kristjansdottir, G, Sandling, J K, Bonetti, A, Roos, I M, Milani, L, Wang, C, Gustafsdottir, S M, Sigurdsson, S, Lundmark, A, Tienari, P J, Koivisto, K, Elovaara, I, Pirttilä, T, Reunanen, M, Peltonen, L, Saarela, J, Hillert, J, Olsson, T, Landegren, U, Alcina, A, Fernández, O, Leyva, L, Guerrero, M, Lucas, M, Izquierdo, G, Matesanz, F, Syvänen, A-C

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