The relation between oral Candida load and bacterial microbiome profiles in Dutch older adults von Kraneveld, Eefje A, Buijs, Mark J, Bonder, Marc J, Visser, Marjolein, Keijser, Bart J F, Crielaard, Wim, Zaura, Egija

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Comparing clustering and pre-processing in taxonomy analysis von BONDER, Marc J, ABELN, Sanne, ZAURA, Egija, BRANDT, Bernd W

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Mitochondrial DNA variants modulate N-formylmethionine, proteostasis and risk of late-onset human diseases von Cai, Na, Gomez-Duran, Aurora, Yonova-Doing, Ekaterina, Kundu, Kousik, Burgess, Annette I., Golder, Zoe J., Calabrese, Claudia, Bonder, Marc J., Camacho, Marta, Lawson, Rachael A., Li, Lixin, Williams-Gray, Caroline H., Di Angelantonio, Emanuele, Roberts, David J., Watkins, Nick A., Ouwehand, Willem H., Butterworth, Adam S., Stewart, Isobel D., Pietzner, Maik, Wareham, Nick J., Langenberg, Claudia, Danesh, John, Walter, Klaudia, Rothwell, Peter M., Howson, Joanna M. M., Stegle, Oliver, Chinnery, Patrick F., Soranzo, Nicole

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Discovery and quality analysis of a comprehensive set of structural variants and short tandem repeats von Jakubosky, David, Smith, Erin N., D’Antonio, Matteo, Jan Bonder, Marc, Young Greenwald, William W., D’Antonio-Chronowska, Agnieszka, Matsui, Hiroko, Stegle, Oliver, Montgomery, Stephen B., DeBoever, Christopher, Frazer, Kelly A.

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Gut Microbial Associations to Plasma Metabolites Linked to Cardiovascular Phenotypes and Risk: A Cross-Sectional Study von Kurilshikov, Alexander, van den Munckhof, Inge C.L, Chen, Lianmin, Bonder, Marc J, Schraa, Kiki, Rutten, Joost H.W, Riksen, Niels P, de Graaf, Jacqueline, Oosting, Marije, Sanna, Serena, Joosten, Leo A.B, van der Graaf, Marinette, Brand, Tessa, Koonen, Debby P.Y, van Faassen, Martijn, Slagboom, P Eline, Xavier, Ramnik J, Kuipers, Folkert, Hofker, Marten H, Wijmenga, Cisca, Netea, Mihai G, Zhernakova, Alexandra, Fu, Jingyuan

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DNA methylation markers associated with type 2 diabetes, fasting glucose and HbA1c levels: a systematic review and replication in a case–control sample of the Lifelines study von Walaszczyk, Eliza, Luijten, Mirjam, Spijkerman, Annemieke M. W., Bonder, Marc J., Lutgers, Helen L., Snieder, Harold, Wolffenbuttel, Bruce H. R., van Vliet-Ostaptchouk, Jana V.

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Properties of structural variants and short tandem repeats associated with gene expression and complex traits von Jakubosky, David, D’Antonio, Matteo, Bonder, Marc Jan, Smail, Craig, Donovan, Margaret K. R., Young Greenwald, William W., Matsui, Hiroko, D’Antonio-Chronowska, Agnieszka, Stegle, Oliver, Smith, Erin N., Montgomery, Stephen B., DeBoever, Christopher, Frazer, Kelly A.

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Improving Phenotypic Prediction by Combining Genetic and Epigenetic Associations von Shah, Sonia, Bonder, Marc J., Marioni, Riccardo E., Zhu, Zhihong, McRae, Allan F., Zhernakova, Alexandra, Harris, Sarah E., Liewald, Dave, Henders, Anjali K., Mendelson, Michael M., Liu, Chunyu, Joehanes, Roby, Liang, Liming, Heijmans, Bastiaan T., ’t Hoen, Peter A.C., van Meurs, Joyce, Isaacs, Aaron, Jansen, Rick, Franke, Lude, Boomsma, Dorret I., Pool, René, van Dongen, Jenny, Hottenga, Jouke J., van Greevenbroek, Marleen M.J., Stehouwer, Coen D.A., van der Kallen, Carla J.H., Schalkwijk, Casper G., Wijmenga, Cisca, Zhernakova, Sasha, Tigchelaar, Ettje F., Slagboom, P. Eline, Beekman, Marian, Deelen, Joris, van Heemst, Diana, Veldink, Jan H., van den Berg, Leonard H., van Duijn, Cornelia M., Hofman, Bert A., Uitterlinden, André G., Jhamai, P. Mila, Verbiest, Michael, Suchiman, H. Eka D., Verkerk, Marijn, van der Breggen, Ruud, van Rooij, Jeroen, Lakenberg, Nico, Mei, Hailiang, van Iterson, Maarten, van Galen, Michiel, Bot, Jan, van ’t Hof, Peter, Deelen, Patrick, Nooren, Irene, Moed, Matthijs, Vermaat, Martijn, Zhernakova, Dasha V., Luijk, René, Bonder, Marc Jan, van Dijk, Freerk, Arindrarto, Wibowo, Kielbasa, Szymon M., Swertz, Morris A., van Zwet, Erik W., Levy, Daniel, Martin, Nicholas G., Starr, John M., Wijmenga, Cisca, Wray, Naomi R., Yang, Jian, Montgomery, Grant W., Franke, Lude, Deary, Ian J., Visscher, Peter M.

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Tobacco smoking is associated with DNA methylation of diabetes susceptibility genes von Ligthart, Symen, Steenaard, Rebecca V., Peters, Marjolein J., van Meurs, Joyce B. J., Sijbrands, Eric J. G., Uitterlinden, André G., Bonder, Marc J., Hofman, Albert, Franco, Oscar H., Dehghan, Abbas

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TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage von Brandt, Bernd W, Bonder, Marc J, Huse, Susan M, Zaura, Egija

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Gut Microbial Associations to Plasma Metabolites Linked to Cardiovascular Phenotypes and Risk von Kurilshikov, Alexander, van den Munckhof, Inge C L, Chen, Lianmin, Bonder, Marc J, Schraa, Kiki, Rutten, Joost H W, Riksen, Niels P, de Graaf, Jacqueline, Oosting, Marije, Sanna, Serena, Joosten, Leo A B, van der Graaf, Marinette, Brand, Tessa, Koonen, Debby P Y, van Faassen, Martijn, Slagboom, P Eline, Xavier, Ramnik J, Kuipers, Folkert, Hofker, Marten H, Wijmenga, Cisca, Netea, Mihai G, Zhernakova, Alexandra, Fu, Jingyuan

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Genetic and epigenetic regulation of gene expression in fetal and adult human livers von Bonder, Marc Jan, Kasela, Silva, Kals, Mart, Tamm, Riin, Lokk, Kaie, Barragan, Isabel, Buurman, Wim A, Deelen, Patrick, Greve, Jan-Willem, Ivanov, Maxim, Rensen, Sander S, van Vliet-Ostaptchouk, Jana V, Wolfs, Marcel G, Fu, Jingyuan, Hofker, Marten H, Wijmenga, Cisca, Zhernakova, Alexandra, Ingelman-Sundberg, Magnus, Franke, Lude, Milani, Lili

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Genotype harmonizer: automatic strand alignment and format conversion for genotype data integration von Deelen, Patrick, Bonder, Marc Jan, van der Velde, K Joeri, Westra, Harm-Jan, Winder, Erwin, Hendriksen, Dennis, Franke, Lude, Swertz, Morris A

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A Powerful Pathway-Based Adaptive Test for Genetic Association with Common or Rare Variants von Pan, Wei, Kwak, Il-Youp, Wei, Peng

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Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes von Xue, Angli, Wu, Yang, Zhu, Zhihong, Zhang, Futao, Kemper, Kathryn E., Zheng, Zhili, Yengo, Loic, Lloyd-Jones, Luke R., Sidorenko, Julia, Wu, Yeda, McRae, Allan F., Visscher, Peter M., Zeng, Jian, Yang, Jian

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Genome-wide identification of directed gene networks using large-scale population genomics data von Luijk, René, Dekkers, Koen F., van Iterson, Maarten, Arindrarto, Wibowo, Claringbould, Annique, Hop, Paul, Boomsma, Dorret I., van Duijn, Cornelia M., van Greevenbroek, Marleen M. J., Veldink, Jan H., Wijmenga, Cisca, Franke, Lude, ’t Hoen, Peter A. C., Jansen, Rick, van Meurs, Joyce, Mei, Hailiang, Slagboom, P. Eline, Heijmans, Bastiaan T., van Zwet, Erik W.

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DNA methylation markers associated with type 2 diabetes, fasting glucose and HbA 1c levels: a systematic review and replication in a case-control sample of the Lifelines study von Walaszczyk, Eliza, Luijten, Mirjam, Spijkerman, Annemieke M W, Bonder, Marc J, Lutgers, Helen L, Snieder, Harold, Wolffenbuttel, Bruce H R, van Vliet-Ostaptchouk, Jana V

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Gene expression counts from induced Pluripotent Stem Cells von Yépez, Vicente A., Bonder, Marc J.

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Mitochondrial DNA variants modulate N-formylmethionine, proteostasis and risk of late-onset human diseases von Cai, Na, Gomez-Duran, Aurora, Yonova-Doing, Ekaterina, Kundu, Kousik, Burgess, Annette I, Golder, Zoe J, Calabrese, Claudia, Bonder, Marc J, Camacho, Marta, Lawson, Rachael A, Li, Lixin, Williams-Gray, Caroline H, ICICLE-PD Study Group, Di Angelantonio, Emanuele, Roberts, David J, Watkins, Nick A, Ouwehand, Willem H, Butterworth, Adam S, Stewart, Isobel D, Pietzner, Maik, Wareham, Nick J, Langenberg, Claudia, Danesh, John, Walter, Klaudia, Rothwell, Peter M, Howson, Joanna MM, Stegle, Oliver, Chinnery, Patrick F, Soranzo, Nicole

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Microbial Impact on Plasma Metabolites is Linked to the Cardiovascular Risk and Phenotypes von van den Munckhof, Inge C., Kurilshikov, Alexander, Bonder, Marc J., Schraa, Kiki, Rutten, Joost H., Riksen, Niels P., de Graaf, Jacqueline, Oosting, Marije, Joosten, Leo A., Koonen, Debby, Slagboom, Eline P., Xavier, Ramnik J., Kuipers, Folkert, Hofker, Marten H., Wijmenga, Cisca, Netea, Mihai G., Zhernakova, Alexandra, Fu, Jingyuan

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