The EcoCyc Database in 2021 von Keseler, Ingrid M, Gama-Castro, Socorro, Mackie, Amanda, Billington, Richard, Bonavides-Martínez, César, Caspi, Ron, Kothari, Anamika, Krummenacker, Markus, Midford, Peter E, Muñiz-Rascado, Luis, Ong, Wai Kit, Paley, Suzanne, Santos-Zavaleta, Alberto, Subhraveti, Pallavi, Tierrafría, Víctor H, Wolfe, Alan J, Collado-Vides, Julio, Paulsen, Ian T, Karp, Peter D

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RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more von Salgado, Heladia, Peralta-Gil, Martin, Gama-Castro, Socorro, Santos-Zavaleta, Alberto, Muñiz-Rascado, Luis, García-Sotelo, Jair S, Weiss, Verena, Solano-Lira, Hilda, Martínez-Flores, Irma, Medina-Rivera, Alejandra, Salgado-Osorio, Gerardo, Alquicira-Hernández, Shirley, Alquicira-Hernández, Kevin, López-Fuentes, Alejandra, Porrón-Sotelo, Liliana, Huerta, Araceli M, Bonavides-Martínez, César, Balderas-Martínez, Yalbi I, Pannier, Lucia, Olvera, Maricela, Labastida, Aurora, Jiménez-Jacinto, Verónica, Vega-Alvarado, Leticia, Del Moral-Chávez, Victor, Hernández-Alvarez, Alfredo, Morett, Enrique, Collado-Vides, Julio

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Flexible gold standards for transcription factor regulatory interactions in Escherichia coli K-12: architecture of evidence types von Lara, Paloma, Gama-Castro, Socorro, Salgado, Heladia, Rioualen, Claire, Tierrafría, Víctor H, Muñiz-Rascado, Luis J, Bonavides-Martínez, César, Collado-Vides, Julio

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RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions von Salgado, Heladia, Gama-Castro, Socorro, Peralta-Gil, Martín, Díaz-Peredo, Edgar, Sánchez-Solano, Fabiola, Santos-Zavaleta, Alberto, Martínez-Flores, Irma, Jiménez-Jacinto, Verónica, Bonavides-Martínez, César, Segura-Salazar, Juan, Martínez-Antonio, Agustino, Collado-Vides, Julio

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RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K‐12 von Salgado, Heladia, Gama‐Castro, Socorro, Martínez‐Antonio, Agustino, Díaz‐Peredo, Edgar, Sánchez‐Solano, Fabiola, Peralta‐Gil, Martín, Garcia‐Alonso, Delfino, Jiménez‐Jacinto, Verónica, Santos‐Zavaleta, Alberto, Bonavides‐Martínez, César, Collado‐Vides, Julio

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Sensory Systems and Transcriptional Regulation in Escherichia coli von Femerling, Georgette, Gama-Castro, Socorro, Lara, Paloma, Ledezma-Tejeida, Daniela, Tierrafría, Víctor H, Muñiz-Rascado, Luis, Bonavides-Martínez, César, Collado-Vides, Julio

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RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation von Gama-Castro, Socorro, Jiménez-Jacinto, Verónica, Peralta-Gil, Martín, Santos-Zavaleta, Alberto, Peñaloza-Spinola, Mónica I, Contreras-Moreira, Bruno, Segura-Salazar, Juan, Muñiz-Rascado, Luis, Martínez-Flores, Irma, Salgado, Heladia, Bonavides-Martínez, César, Abreu-Goodger, Cei, Rodríguez-Penagos, Carlos, Miranda-Ríos, Juan, Morett, Enrique, Merino, Enrique, Huerta, Araceli M, Treviño-Quintanilla, Luis, Collado-Vides, Julio

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The EcoCyc database: reflecting new knowledge about Escherichia coli K-12 von Keseler, Ingrid M, Mackie, Amanda, Santos-Zavaleta, Alberto, Billington, Richard, Bonavides-Martínez, César, Caspi, Ron, Fulcher, Carol, Gama-Castro, Socorro, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Muñiz-Rascado, Luis, Ong, Quang, Paley, Suzanne, Peralta-Gil, Martin, Subhraveti, Pallavi, Velázquez-Ramírez, David A, Weaver, Daniel, Collado-Vides, Julio, Paulsen, Ian, Karp, Peter D

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Multidimensional annotation of the Escherichia coli K-12 genome von Karp, Peter D, Keseler, Ingrid M, Shearer, Alexander, Latendresse, Mario, Krummenacker, Markus, Paley, Suzanne M, Paulsen, Ian, Collado-Vides, Julio, Gama-Castro, Socorro, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Peñaloza-Spínola, Mónica I, Bonavides-Martinez, César, Ingraham, John

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RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12 von Santos-Zavaleta, Alberto, Salgado, Heladia, Gama-Castro, Socorro, Sánchez-Pérez, Mishael, Gómez-Romero, Laura, Ledezma-Tejeida, Daniela, García-Sotelo, Jair Santiago, Alquicira-Hernández, Kevin, Muñiz-Rascado, Luis José, Peña-Loredo, Pablo, Ishida-Gutiérrez, Cecilia, Velázquez-Ramírez, David A, Del Moral-Chávez, Víctor, Bonavides-Martínez, César, Méndez-Cruz, Carlos-Francisco, Galagan, James, Collado-Vides, Julio

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RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond von Gama-Castro, Socorro, Salgado, Heladia, Santos-Zavaleta, Alberto, Ledezma-Tejeida, Daniela, Muñiz-Rascado, Luis, García-Sotelo, Jair Santiago, Alquicira-Hernández, Kevin, Martínez-Flores, Irma, Pannier, Lucia, Castro-Mondragón, Jaime Abraham, Medina-Rivera, Alejandra, Solano-Lira, Hilda, Bonavides-Martínez, César, Pérez-Rueda, Ernesto, Alquicira-Hernández, Shirley, Porrón-Sotelo, Liliana, López-Fuentes, Alejandra, Hernández-Koutoucheva, Anastasia, Del Moral-Chávez, Víctor, Rinaldi, Fabio, Collado-Vides, Julio

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EcoCyc: fusing model organism databases with systems biology von Keseler, Ingrid M, Mackie, Amanda, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Gama-Castro, Socorro, Bonavides-Martínez, César, Fulcher, Carol, Huerta, Araceli M, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Muñiz-Rascado, Luis, Ong, Quang, Paley, Suzanne, Schröder, Imke, Shearer, Alexander G, Subhraveti, Pallavi, Travers, Mike, Weerasinghe, Deepika, Weiss, Verena, Collado-Vides, Julio, Gunsalus, Robert P, Paulsen, Ian, Karp, Peter D

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EcoCyc: a comprehensive database of Escherichia coli biology von Keseler, Ingrid M, Collado-Vides, Julio, Santos-Zavaleta, Alberto, Peralta-Gil, Martin, Gama-Castro, Socorro, Muñiz-Rascado, Luis, Bonavides-Martinez, César, Paley, Suzanne, Krummenacker, Markus, Altman, Tomer, Kaipa, Pallavi, Spaulding, Aaron, Pacheco, John, Latendresse, Mario, Fulcher, Carol, Sarker, Malabika, Shearer, Alexander G, Mackie, Amanda, Paulsen, Ian, Gunsalus, Robert P, Karp, Peter D

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RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) von Gama-Castro, Socorro, Salgado, Heladia, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Muñiz-Rascado, Luis, Solano-Lira, Hilda, Jimenez-Jacinto, Verónica, Weiss, Verena, García-Sotelo, Jair S, López-Fuentes, Alejandra, Porrón-Sotelo, Liliana, Alquicira-Hernández, Shirley, Medina-Rivera, Alejandra, Martínez-Flores, Irma, Alquicira-Hernández, Kevin, Martínez-Adame, Ruth, Bonavides-Martínez, César, Miranda-Ríos, Juan, Huerta, Araceli M, Mendoza-Vargas, Alfredo, Collado-Torres, Leonardo, Taboada, Blanca, Vega-Alvarado, Leticia, Olvera, Maricela, Olvera, Leticia, Grande, Ricardo, Morett, Enrique, Collado-Vides, Julio

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RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12 von Salgado, Heladia, Gama-Castro, Socorro, Lara, Paloma, Mejia-Almonte, Citlalli, Alarcón-Carranza, Gabriel, López-Almazo, Andrés G, Betancourt-Figueroa, Felipe, Peña-Loredo, Pablo, Alquicira-Hernández, Shirley, Ledezma-Tejeida, Daniela, Arizmendi-Zagal, Lizeth, Mendez-Hernandez, Francisco, Diaz-Gomez, Ana K, Ochoa-Praxedis, Elizabeth, Muñiz-Rascado, Luis J, García-Sotelo, Jair S, Flores-Gallegos, Fanny A, Gómez, Laura, Bonavides-Martínez, César, del Moral-Chávez, Víctor M, Hernández-Alvarez, Alfredo J, Santos-Zavaleta, Alberto, Capella-Gutierrez, Salvador, Gelpi, Josep Lluis, Collado-Vides, Julio

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Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures von De Las Rivas, Javier, Bonavides-Martínez, Cesar, Campos-Laborie, Francisco Jose

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RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12 von Tierrafría, Víctor H, Rioualen, Claire, Salgado, Heladia, Lara, Paloma, Gama-Castro, Socorro, Lally, Patrick, Gómez-Romero, Laura, Peña-Loredo, Pablo, López-Almazo, Andrés G, Alarcón-Carranza, Gabriel, Betancourt-Figueroa, Felipe, Alquicira-Hernández, Shirley, Polanco-Morelos, J Enrique, García-Sotelo, Jair, Gaytan-Nuñez, Estefani, Méndez-Cruz, Carlos-Francisco, Muñiz, Luis J, Bonavides-Martínez, César, Moreno-Hagelsieb, Gabriel, Galagan, James E, Wade, Joseph T, Collado-Vides, Julio

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RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12 von Salgado, H, Santos-Zavaleta, A, Gama-Castro, S, Millán-Zárate, D, Díaz-Peredo, E, Sánchez-Solano, F, Pérez-Rueda, E, Bonavides-Martínez, C, Collado-Vides, J

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Sensory systems and transcriptional regulation in escherichia coli von Femerling, Georgette, Gamma-Castro, Socorro, Lara, Paloma, Ledezma-Tejeida, Daniela, Tierrafría, Víctor H, Muñiz-Rascado, Luis, Bonavides-Martínez, César, Collado Vides, Pedro Julio

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Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures von De Las Rivas, Javier, Bonavides-Martínez, Cesar, Campos-Laborie, Francisco Jose

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