bnglViz: online visualization of rule-based models von Liguori-Bills, Noah, Blinov, Michael L

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Monkeying around with monkeyflowers: Modeling pigmentation patterning mechanisms in Mimulus von Blinov, Michael L., Schaumburger, Nathan, Yuan, Yaowu

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Two MYB Proteins in a Self-Organizing Activator-Inhibitor System Produce Spotted Pigmentation Patterns von Ding, Baoqing, Patterson, Erin L., Holalu, Srinidhi V., Li, Jingjian, Johnson, Grace A., Stanley, Lauren E., Greenlee, Anna B., Peng, Foen, Bradshaw, H.D., Blinov, Michael L., Blackman, Benjamin K., Yuan, Yao-Wu

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MolClustPy: a Python package to characterize multivalent biomolecular clusters von Chattaraj, Aniruddha, Nalagandla, Indivar, Loew, Leslie M, Blinov, Michael L

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The solubility product extends the buffering concept to heterotypic biomolecular condensates von Chattaraj, Aniruddha, Blinov, Michael L., Loew, Leslie M.

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Pleomorphic Ensembles: Formation of Large Clusters Composed of Weakly Interacting Multivalent Molecules von Falkenberg, Cibele V., Blinov, Michael L., Loew, Leslie M.

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RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats von Shaikh, Bilal, Marupilla, Gnaneswara, Wilson, Mike, Blinov, Michael L, Moraru, Ion I, Karr, Jonathan R

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Virtual cell modeling and simulation software von Blinov, Michael L., Moraru, Ion I., Schaff, James C., Loew, Leslie M.

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Editorial: Network-based mathematical modeling in cell and developmental biology von Blinov, Michael L, Mertins, Susan D

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Multivalent Molecules as Modulators of RNA Granule Size and Composition von Falkenberg, Cibele Vieira, Carson, John H., Blinov, Michael L.

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The BioPAX community standard for pathway data sharing von Bader, Gary D, Demir, Emek, Cary, Michael P, Paley, Suzanne, Fukuda, Ken, Lemer, Christian, Vastrik, Imre, Wu, Guanming, D'Eustachio, Peter, Schaefer, Carl, Luciano, Joanne, Schacherer, Frank, Martinez-Flores, Irma, Hu, Zhenjun, Jimenez-Jacinto, Veronica, Joshi-Tope, Geeta, Kandasamy, Kumaran, Lopez-Fuentes, Alejandra C, Mi, Huaiyu, Pichler, Elgar, Rodchenkov, Igor, Splendiani, Andrea, Tkachev, Sasha, Zucker, Jeremy, Gopinath, Gopal, Rajasimha, Harsha, Ramakrishnan, Ranjani, Shah, Imran, Syed, Mustafa, Anwar, Nadia, Babur, Özgün, Blinov, Michael, Brauner, Erik, Corwin, Dan, Donaldson, Sylva, Gibbons, Frank, Goldberg, Robert, Hornbeck, Peter, Luna, Augustin, Murray-Rust, Peter, Neumann, Eric, Reubenacker, Oliver, Samwald, Matthias, van Iersel, Martijn, Wimalaratne, Sarala, Allen, Keith, Braun, Burk, Whirl-Carrillo, Michelle, Cheung, Kei-Hoi, Dahlquist, Kam, Finney, Andrew, Gillespie, Marc, Glass, Elizabeth, Gong, Li, Haw, Robin, Honig, Michael, Hubaut, Olivier, Kane, David, Krupa, Shiva, Kutmon, Martina, Leonard, Julie, Marks, Debbie, Merberg, David, Petri, Victoria, Pico, Alex, Ravenscroft, Dean, Ren, Liya, Shah, Nigam, Sunshine, Margot, Tang, Rebecca, Whaley, Ryan, Letovksy, Stan, Buetow, Kenneth H, Rzhetsky, Andrey, Schachter, Vincent, Sobral, Bruno S, Dogrusoz, Ugur, McWeeney, Shannon, Aladjem, Mirit, Birney, Ewan, Collado-Vides, Julio, Goto, Susumu, Hucka, Michael, Novère, Nicolas Le, Maltsev, Natalia, Pandey, Akhilesh, Thomas, Paul, Wingender, Edgar, Karp, Peter D, Sander, Chris

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BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains von Blinov, Michael L., Faeder, James R., Goldstein, Byron, Hlavacek, William S.

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Compartmental and Spatial Rule-Based Modeling with Virtual Cell von Blinov, Michael L., Schaff, James C., Vasilescu, Dan, Moraru, Ion I., Bloom, Judy E., Loew, Leslie M.

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Rule-Based Modeling of Biochemical Systems with BioNetGen von Faeder, James R., Blinov, Michael L., Hlavacek, William S.

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SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks von Rougny, Adrien, Toure, Vasundra, Albanese, John, Waltemath, Dagmar, Shirshov, Denis, Sorokin, Anatoly, Bader, Gary D., Blinov, Michael L., Mazein, Alexander

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Mixed selling of different poultry species facilitates emergence of public-health-threating avian influenza viruses von Wang, Zhen, Li, Hongkui, Li, Yuhan, Wu, Zhuanli, Ai, Hui, Zhang, Ming, Rong, Libin, Blinov, Michael L., Tong, Qi, Liu, Litao, Sun, Honglei, Pu, Juan, Feng, Wenhai, Liu, Jinhua, Sun, Yipeng

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Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0 von Rougny, Adrien, Touré, Vasundra, Moodie, Stuart, Balaur, Irina, Czauderna, Tobias, Borlinghaus, Hanna, Dogrusoz, Ugur, Mazein, Alexander, Dräger, Andreas, Blinov, Michael L, Villéger, Alice, Haw, Robin, Demir, Emek, Mi, Huaiyu, Sorokin, Anatoly, Schreiber, Falk, Luna, Augustin

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Rule-based modeling with Virtual Cell von Schaff, James C, Vasilescu, Dan, Moraru, Ion I, Loew, Leslie M, Blinov, Michael L

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Systems biology graphical notation markup language (SBGNML) version 0.3 von Bergmann, Frank T., Czauderna, Tobias, Dogrusoz, Ugur, Rougny, Adrien, Dräger, Andreas, Touré, Vasundra, Mazein, Alexander, Blinov, Michael L., Luna, Augustin

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The complexity of complexes in signal transduction von Hlavacek, William S., Faeder, James R., Blinov, Michael L., Perelson, Alan S., Goldstein, Byron

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