Aging-like Spontaneous Epigenetic Silencing Facilitates Wnt Activation, Stemness, and BrafV600E-Induced Tumorigenesis von Tao, Yong, Kang, Byunghak, Petkovich, Daniel A., Bhandari, Yuba R., In, Julie, Stein-O'Brien, Genevieve, Kong, Xiangqian, Xie, Wenbing, Zachos, Nicholas, Maegawa, Shinji, Vaidya, Himani, Brown, Stephen, Chiu Yen, Ray-Whay, Shao, Xiaojian, Thakor, Jai, Lu, Zhihao, Cai, Yi, Zhang, Yuezheng, Mallona, Izaskun, Peinado, Miguel Angel, Zahnow, Cynthia A., Ahuja, Nita, Fertig, Elana, Issa, Jean-Pierre, Baylin, Stephen B., Easwaran, Hariharan

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The conformational space of RNase P RNA in solution von Lee, Yun-Tzai, Degenhardt, Maximilia F S, Skeparnias, Ilias, Degenhardt, Hermann F, Bhandari, Yuba R, Yu, Ping, Stagno, Jason R, Fan, Lixin, Zhang, Jinwei, Wang, Yun-Xing

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Determining structures of RNA conformers using AFM and deep neural networks von Degenhardt, Maximilia F S, Degenhardt, Hermann F, Bhandari, Yuba R, Lee, Yun-Tzai, Ding, Jienyu, Yu, Ping, Heinz, William F, Stagno, Jason R, Schwieters, Charles D, Watts, Norman R, Wingfield, Paul T, Rein, Alan, Zhang, Jinwei, Wang, Yun-Xing

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Small-angle X-ray scattering: a bridge between RNA secondary structures and three-dimensional topological structures von Fang, Xianyang, Stagno, Jason R, Bhandari, Yuba R, Zuo, Xiaobing, Wang, Yun-Xing

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Transcription factor expression repertoire basis for epigenetic and transcriptional subtypes of colorectal cancers von Bhandari, Yuba R, Krishna, Vinod, Powers, Rachael, Parmar, Sehej, Thursby, Sara-Jayne, Gupta, Ekta, Kulak, Ozlem, Gokare, Prashanth, Reumers, Joke, Van Wesenbeeck, Liesbeth, Bachman, Kurtis E, Baylin, Stephen B, Easwaran, Hariharan

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Real‐time crystallographic studies of the adenine riboswitch using an X‐ray free‐electron laser von Stagno, Jason R., Bhandari, Yuba R., Conrad, Chelsie E., Liu, Yu, Wang, Yun‐Xing

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Cooperative structural transitions in amyloid-like aggregation von Steckmann, Timothy, Bhandari, Yuba R., Chapagain, Prem P., Gerstman, Bernard S.

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Molecular Dynamics Investigations of the α‑Helix to β‑Barrel Conformational Transformation in the RfaH Transcription Factor von GC, Jeevan B, Bhandari, Yuba R, Gerstman, Bernard S, Chapagain, Prem P

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Synchronous RNA conformational changes trigger ordered phase transitions in crystals von Ramakrishnan, Saminathan, Stagno, Jason R., Conrad, Chelsie E., Ding, Jienyu, Yu, Ping, Bhandari, Yuba R., Lee, Yun-Tzai, Pauly, Gary, Yefanov, Oleksandr, Wiedorn, Max O., Knoska, Juraj, Oberthür, Dominik, White, Thomas A., Barty, Anton, Mariani, Valerio, Li, Chufeng, Brehm, Wolfgang, Heinz, William F., Magidson, Valentin, Lockett, Stephen, Hunter, Mark S., Boutet, Sébastien, Zatsepin, Nadia A., Zuo, Xiaobing, Grant, Thomas D., Pandey, Suraj, Schmidt, Marius, Spence, John C. H., Chapman, Henry N., Wang, Yun-Xing

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Topological Structure Determination of RNA Using Small-Angle X-Ray Scattering von Bhandari, Yuba R., Fan, Lixin, Fang, Xianyang, Zaki, George F., Stahlberg, Eric A., Jiang, Wei, Schwieters, Charles D., Stagno, Jason R., Wang, Yun-Xing

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Exploring the Diffusion of Molecular Oxygen in the Red Fluorescent Protein mCherry Using Explicit Oxygen Molecular Dynamics Simulations von Regmi, Chola K, Bhandari, Yuba R, Gerstman, Bernard S, Chapagain, Prem P

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Modeling RNA topological structures using small angle X-ray scattering von Bhandari, Yuba R., Jiang, Wei, Stahlberg, Eric A., Stagno, Jason R., Wang, Yun-Xing

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Lattice model simulations of the effects of the position of a peptide trigger segment on helix folding and dimerization von Bhandari, Yuba R, Chapagain, Prem P, Gerstman, Bernard S

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Small-angle X-ray scattering: a bridge between RNA secondary structures and three-dimensional topological structures von Fang, Xianyang, Stagno, Jason R., Bhandari, Yuba R., Zuo, Xiaobing, Wang, Yun-Xing

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Structural propensities and entropy effects in peptide helix-coil transitions von Chemmama, Ilan E, Pelea, Adam Colt, Bhandari, Yuba R, Chapagain, Prem P, Gerstman, Bernard S

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Abstract A012: Transcription factor expression repertoire basis for epigenetic and transcriptional subtypes of colorectal cancers von Bhandari, Yuba R., Krishna, Vinod, Powers, Rachael, Parmar, Sehej, Thursby, Sara-Jayne, Gupta, Ekta, Kulak, Ozlem, Gokare, Prashanth, Reumers, Joke, Van Wesenbeeck, Liesbeth, Bachman, Kurtis E., Baylin, Stephen B., Easwaran, Hariharan

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Using X-ray free-electron laser to capture intermediate states von Stagno, Jason R., Bhandari, Yuba R., Conrad, Chelsie E., Grant, Thomas D., Fromme, Petra, Hunter, Mark S., Boutet, S., Tan, Kemin, Zuo, Xiaobing, Ji, Xinhua, Zatsepin, Nadia A., Chapman, Henry N., Spence, John C. H., Wang, Yun-Xing

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Free-energy landscapes and thermodynamic parameters of complex molecules from nonequilibrium simulation trajectories von Chapagain, Prem P, Gerstman, Bernard S, Bhandari, Yuba R, Rimal, Dipak

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Aging-like Spontaneous Epigenetic Silencing Facilitates Wnt Activation, Stemness, and Braf V600E -Induced Tumorigenesis von Tao, Yong, Kang, Byunghak, Petkovich, Daniel A, Bhandari, Yuba R, In, Julie, Stein-O'Brien, Genevieve, Kong, Xiangqian, Xie, Wenbing, Zachos, Nicholas, Maegawa, Shinji, Vaidya, Himani, Brown, Stephen, Chiu Yen, Ray-Whay, Shao, Xiaojian, Thakor, Jai, Lu, Zhihao, Cai, Yi, Zhang, Yuezheng, Mallona, Izaskun, Peinado, Miguel Angel, Zahnow, Cynthia A, Ahuja, Nita, Fertig, Elana, Issa, Jean-Pierre, Baylin, Stephen B, Easwaran, Hariharan

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Visualizing RNA conformational and architectural heterogeneity in solution von Ding, Jienyu, Lee, Yun-Tzai, Bhandari, Yuba, Schwieters, Charles D., Fan, Lixin, Yu, Ping, Tarosov, Sergey G., Stagno, Jason R., Ma, Buyong, Nussinov, Ruth, Rein, Alan, Zhang, Jinwei, Wang, Yun-Xing

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