A consensus protocol for the standardization of cerebrospinal fluid collection and biobanking von TEUNISSEN, C. E, PETZOLD, A, HINTZEN, R. Q, HUGHES, S. G, JOHNSON, M. H, KRASULOVA, E, KUHLE, J, MAGNONE, M. C, RAJDA, C, REJDAK, K, SCHMIDT, H. K, VAN PESCH, V, BENNETT, J. L, WAUBANT, E, WOLF, C, GIOVANNONI, G, HEMMER, B, TUMANI, H, DEISENHAMMER, F, BERVEN, F. S, BRUNDIN, L, COMABELLA, M, FRANCIOTTA, D, FREDERIKSEN, J. L, FLEMING, J. O, FURLAN, R

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SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches von Vaudel, Marc, Barsnes, Harald, Berven, Frode S, Sickmann, Albert, Martens, Lennart

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Comparing Efficiency of Lysis Buffer Solutions and Sample Preparation Methods for Liquid Chromatography-Mass Spectrometry Analysis of Human Cells and Plasma von Neset, Lasse, Takayidza, Gracious, Berven, Frode S, Hernandez-Valladares, Maria

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Proteomic analysis of peripheral blood mononuclear cells isolated from patients with pulmonary tuberculosis: A pilot study from Zanzibar, Tanzania von Barakat, Ahmed, Birkeland, Even, Jørstad, Melissa D, El Hajj, Magalie, Marijani, Msafiri, Døskeland, Anne, Mjaavatten, Olav, Berven, Frode S, Mustafa, Tehmina

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Natalizumab promotes anti-inflammatory and repair effects in multiple sclerosis von Lereim, Ragnhild Reehorst, Nytrova, Petra, Guldbrandsen, Astrid, Havrdova, Eva Kubala, Myhr, Kjell-Morten, Barsnes, Harald, Berven, Frode S

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compomics-utilities: an open-source Java library for computational proteomics von Barsnes, Harald, Vaudel, Marc, Colaert, Niklaas, Helsens, Kenny, Sickmann, Albert, Berven, Frode S, Martens, Lennart

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Exploring the potential of public proteomics data von Vaudel, Marc, Verheggen, Kenneth, Csordas, Attila, Ræder, Helge, Berven, Frode S., Martens, Lennart, Vizcaíno, Juan A., Barsnes, Harald

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Proteomic Comparison of Bone Marrow Derived Osteoblasts and Mesenchymal Stem Cells von Aasebo, Elise, Brenner, Annette K., Hernandez-Valladares, Maria, Birkeland, Even, Berven, Frode S., Selheim, Frode, Bruserud, Oystein

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Cuprizone and EAE mouse frontal cortex proteomics revealed proteins altered in multiple sclerosis von Oveland, Eystein, Ahmad, Intakhar, Lereim, Ragnhild Reehorst, Kroksveen, Ann Cathrine, Barsnes, Harald, Guldbrandsen, Astrid, Myhr, Kjell-Morten, Bø, Lars, Berven, Frode S., Wergeland, Stig

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Quantitative proteome profiling reveals molecular hallmarks of egg quality in Atlantic halibut: impairments of transcription and protein folding impede protein and energy homeostas... von Yilmaz, Ozlem, Jensen, Anders Mangor, Harboe, Torstein, Magster, Margareth, Jensen, Ragnfrid Mangor, Mjaavatten, Olav, Birkeland, Even, Spriet, Endy, Sandven, Linda, Furmanek, Tomasz, Berven, Frode S, Wargelius, Anna, Norberg, Birgitta

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Effects of blood contamination and the rostro-caudal gradient on the human cerebrospinal fluid proteome von Aasebø, Elise, Opsahl, Jill Anette, Bjørlykke, Yngvild, Myhr, Kjell-Morten, Kroksveen, Ann Cathrine, Berven, Frode S

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Proteomics of human cerebrospinal fluid: Discovery and verification of biomarker candidates in neurodegenerative diseases using quantitative proteomics von Kroksveen, A.C., Opsahl, J.A., Aye, T.T., Ulvik, R.J., Berven, F.S.

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Long-term smoking alters abundance of over half of the proteome in bronchoalveolar lavage cell in smokers with normal spirometry, with effects on molecular pathways associated with... von Yang, Mingxing, Kohler, Maxie, Heyder, Tina, Forsslund, Helena, Garberg, Hilde K, Karimi, Reza, Grunewald, Johan, Berven, Frode S, Magnus Sköld, C, Wheelock, Åsa M

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Proteomic profiling of lung immune cells reveals dysregulation of phagocytotic pathways in female-dominated molecular COPD phenotype von Yang, Mingxing, Kohler, Maxie, Heyder, Tina, Forsslund, Helena, Garberg, Hilde K, Karimi, Reza, Grunewald, Johan, Berven, Frode S, Nyrén, Sven, Magnus Sköld, C, Wheelock, Åsa M

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Association of chromosome 19 to lung cancer genotypes and phenotypes von Wang, Xiangdong, Zhang, Yong, Nilsson, Carol L., Berven, Frode S., Andrén, Per E., Carlsohn, Elisabet, Horvatovich, Peter, Malm, Johan, Fuentes, Manuel, Végvári, Ákos, Welinder, Charlotte, Fehniger, Thomas E., Rezeli, Melinda, Edula, Goutham, Hober, Sophia, Nishimura, Toshihide, Marko-Varga, György

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BOMP: a program to predict integral β-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria von Berven, Frode S., Flikka, Kristian, Jensen, Harald B., Eidhammer, Ingvar

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Anatomy and evolution of database search engines—a central component of mass spectrometry based proteomic workflows von Verheggen, Kenneth, Ræder, Helge, Berven, Frode S., Martens, Lennart, Barsnes, Harald, Vaudel, Marc

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IsobariQ: Software for Isobaric Quantitative Proteomics using IPTL, iTRAQ, and TMT von Arntzen, Magnus Ø, Koehler, Christian J, Barsnes, Harald, Berven, Frode S, Treumann, Achim, Thiede, Bernd

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Consensus definitions and application guidelines for control groups in cerebrospinal fluid biomarker studies in multiple sclerosis von Teunissen, Charlotte, Menge, Til, Altintas, Ayse, Álvarez-Cermeño, José C, Bertolotto, Antonio, Berven, Frode S, Brundin, Lou, Comabella, Manuel, Degn, Matilde, Deisenhammer, Florian, Fazekas, Franz, Franciotta, Diego, Frederiksen, Jette L, Galimberti, Daniela, Gnanapavan, Sharmilee, Hegen, Harald, Hemmer, Bernhard, Hintzen, Rogier, Hughes, Steve, Iacobaeus, Ellen, Kroksveen, Ann C, Kuhle, Jens, Richert, John, Tumani, Hayrettin, Villar, Luisa M, Drulovic, Jelena, Dujmovic, Irena, Khalil, Michael, Bartos, Ales

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Quantitative proteomics suggests decrease in the secretogranin-1 cerebrospinal fluid levels during the disease course of multiple sclerosis von Kroksveen, Ann C., Jaffe, Jacob D., Aasebø, Elise, Barsnes, Harald, Bjørlykke, Yngvild, Franciotta, Diego, Keshishian, Hasmik, Myhr, Kjell-Morten, Opsahl, Jill A., van Pesch, Vincent, Teunissen, Charlotte E., Torkildsen, Øivind, Ulvik, Rune J., Vethe, Heidrun, Carr, Steven A., Berven, Frode S.

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