Cigarette Smoke Silences Innate Lymphoid Cell Function and Facilitates an Exacerbated Type I Interleukin-33-Dependent Response to Infection von Kearley, Jennifer, Silver, Jonathan S., Sanden, Caroline, Liu, Zheng, Berlin, Aaron A., White, Natalie, Mori, Michiko, Pham, Tuyet-Hang, Ward, Christine K., Criner, Gerard J., Marchetti, Nathaniel, Mustelin, Tomas, Erjefalt, Jonas S., Kolbeck, Roland, Humbles, Alison A.

Volltext

Whole genome amplification and de novo assembly of single bacterial cells von Rodrigue, Sébastien, Malmstrom, Rex R, Berlin, Aaron M, Birren, Bruce W, Henn, Matthew R, Chisholm, Sallie W

Volltext

Comparative analysis of RNA sequencing methods for degraded or low-input samples von Adiconis, Xian, Borges-Rivera, Diego, Satija, Rahul, DeLuca, David S, Busby, Michele A, Berlin, Aaron M, Sivachenko, Andrey, Thompson, Dawn Anne, Wysoker, Alec, Fennell, Timothy, Gnirke, Andreas, Pochet, Nathalie, Regev, Aviv, Levin, Joshua Z

Volltext

A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries von Fisher, Sheila, Barry, Andrew, Abreu, Justin, Minie, Brian, Nolan, Jillian, Delorey, Toni M, Young, Geneva, Fennell, Timothy J, Allen, Alexander, Ambrogio, Lauren, Berlin, Aaron M, Blumenstiel, Brendan, Cibulskis, Kristian, Friedrich, Dennis, Johnson, Ryan, Juhn, Frank, Reilly, Brian, Shammas, Ramy, Stalker, John, Sykes, Sean M, Thompson, Jon, Walsh, John, Zimmer, Andrew, Zwirko, Zac, Gabriel, Stacey, Nicol, Robert, Nusbaum, Chad

Volltext

High-quality draft assemblies of mammalian genomes from massively parallel sequence data von Gnerre, Sante, MacCallum, Iain, Przybylski, Dariusz, Ribeiro, Filipe J, Burton, Joshua N, Walker, Bruce J, Sharpe, Ted, Hall, Giles, Shea, Terrance P, Sykes, Sean, Berlin, Aaron M, Aird, Daniel, Costello, Maura, Daza, Riza, Williams, Louise, Nicol, Robert, Gnirke, Andreas, Nusbaum, Chad, Lander, Eric S, Jaffe, David B

Volltext

Inflammatory triggers associated with exacerbations of COPD orchestrate plasticity of group 2 innate lymphoid cells in the lungs von Silver, Jonathan S, Kearley, Jennifer, Copenhaver, Alan M, Sanden, Caroline, Mori, Michiko, Yu, Li, Pritchard, Gretchen Harms, Berlin, Aaron A, Hunter, Christopher A, Bowler, Russell, Erjefalt, Jonas S, Kolbeck, Roland, Humbles, Alison A

Volltext

IL-17–Induced Pulmonary Pathogenesis during Respiratory Viral Infection and Exacerbation of Allergic Disease von Mukherjee, Sumanta, Lindell, Dennis M, Berlin, Aaron A, Morris, Susan B, Shanley, Thomas P, Hershenson, Marc B, Lukacs, Nicholas W

Volltext

Thymic stromal lymphopoietin is induced by respiratory syncytial virus–infected airway epithelial cells and promotes a type 2 response to infection von Lee, Hai-Chon, PhD, Headley, Mark B., PhD, Loo, Yueh-Ming, PhD, Berlin, Aaron, BS, Gale, Michael, PhD, Debley, Jason S., MD, Lukacs, Nicholas W., PhD, Ziegler, Steven F., PhD

Volltext

Finished bacterial genomes from shotgun sequence data von Ribeiro, Filipe J, Przybylski, Dariusz, Yin, Shuangye, Sharpe, Ted, Gnerre, Sante, Abouelleil, Amr, Berlin, Aaron M, Montmayeur, Anna, Shea, Terrance P, Walker, Bruce J, Young, Sarah K, Russ, Carsten, Nusbaum, Chad, MacCallum, Iain, Jaffe, David B

Volltext

IL-33-ST2 axis regulates myeloid cell differentiation and activation enabling effective club cell regeneration von Dagher, Rania, Copenhaver, Alan M., Besnard, Valerie, Berlin, Aaron, Hamidi, Fatima, Maret, Marielle, Wang, Jingya, Qu, Xiaotao, Shrestha, Yashaswi, Wu, Jincheng, Gautier, Gregory, Raja, Rajiv, Aubier, Michel, Kolbeck, Roland, Humbles, Alison A., Pretolani, Marina

Volltext

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments von Sullivan, Matthew B., Huang, Katherine H., Ignacio-Espinoza, Julio C., Berlin, Aaron M., Kelly, Libusha, Weigele, Peter R., DeFrancesco, Alicia S., Kern, Suzanne E., Thompson, Luke R., Young, Sarah, Yandava, Chandri, Fu, Ross, Krastins, Bryan, Chase, Michael, Sarracino, David, Osburne, Marcia S., Henn, Matthew R., Chisholm, Sallie W.

Volltext

The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations von Keane, Michael, Craig, Thomas, Alföldi, Jessica, Berlin, Aaron M, Johnson, Jeremy, Seluanov, Andrei, Gorbunova, Vera, Di Palma, Federica, Lindblad-Toh, Kerstin, Church, George M, de Magalhães, João Pedro

Volltext

Pulmonary IL-17E (IL-25) Production and IL-17RB+ Myeloid Cell-Derived Th2 Cytokine Production Are Dependent upon Stem Cell Factor-Induced Responses during Chronic Allergic Pulmonar... von Dolgachev, Vladislav, Petersen, Bryan C, Budelsky, Alison L, Berlin, Aaron A, Lukacs, Nicholas W

Volltext

B cell antigen presentation promotes Th2 responses and immunopathology during chronic allergic lung disease von Lindell, Dennis M, Berlin, Aaron A, Schaller, Matthew A, Lukacs, Nicholas W

Volltext

Analysis of high-throughput sequencing and annotation strategies for phage genomes von Henn, Matthew R, Sullivan, Matthew B, Stange-Thomann, Nicole, Osburne, Marcia S, Berlin, Aaron M, Kelly, Libusha, Yandava, Chandri, Kodira, Chinnappa, Zeng, Qiandong, Weiand, Michael, Sparrow, Todd, Saif, Sakina, Giannoukos, Georgia, Young, Sarah K, Nusbaum, Chad, Birren, Bruce W, Chisholm, Sallie W

Volltext

Risk Assessment for Use of a Porcine Circovirus-Contaminated Reagent in a Barrier Maintained Rodent Colony von Peterson, Norman C, Berlin, Aaron A

Volltext

Deletion of TLR3 Alters the Pulmonary Immune Environment and Mucus Production during Respiratory Syncytial Virus Infection von Rudd, Brian D, Smit, Jetse J, Flavell, Richard A, Alexopoulou, Lena, Schaller, Matthew A, Gruber, Achim, Berlin, Aaron A, Lukacs, Nicholas W

Volltext

Simultaneous Identification of Cell of Origin, Translocations, and Hotspot Mutations in Diffuse Large B-Cell Lymphoma Using a Single RNA-Sequencing Assay von Crotty, Rory, Hu, Krista, Stevenson, Kristen, Pontius, Maggie Y, Sohani, Aliyah R, Ryan, Russell J H, Rueckert, Erroll, Brauer, Heather A, Hudson, Briana, Berlin, Aaron M, Rodenbaugh, Matt, Licon, Abel, Haimes, Josh, Iafrate, A John, Nardi, Valentina, Louissaint, Abner

Volltext

In vivo multiplexed interrogation of amplified genes identifies GAB2 as an ovarian cancer oncogene von Dunn, Gavin P., Cheung, Hiu Wing, Agarwalla, Pankaj K., Thomas, Sapana, Zektser, Yulia, Karst, Alison M., Boehm, Jesse S., Weir, Barbara A., Berlin, Aaron M., Zou, Lihua, Getz, Gad, Liu, Joyce F., Hirsch, Michelle, Vazquez, Francisca, Root, David E., Beroukhim, Rameen, Drapkin, Ronny, Hahn, William C.

Volltext

Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification von Malboeuf, Christine M, Yang, Xiao, Charlebois, Patrick, Qu, James, Berlin, Aaron M, Casali, Monica, Pesko, Kendra N, Boutwell, Christian L, DeVincenzo, John P, Ebel, Gregory D, Allen, Todd M, Zody, Michael C, Henn, Matthew R, Levin, Joshua Z

Volltext