NanoPack: visualizing and processing long-read sequencing data von De Coster, Wouter, D'Hert, Svenn, Schultz, Darrin T, Cruts, Marc, Van Broeckhoven, Christine

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NextPolish: a fast and efficient genome polishing tool for long-read assembly von Hu, Jiang, Fan, Junpeng, Sun, Zongyi, Liu, Shanlin

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BBKNN: fast batch alignment of single cell transcriptomes von Polański, Krzysztof, Young, Matthew D, Miao, Zhichao, Meyer, Kerstin B, Teichmann, Sarah A, Park, Jong-Eun

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GenomeScope: fast reference-free genome profiling from short reads von Vurture, Gregory W, Sedlazeck, Fritz J, Nattestad, Maria, Underwood, Charles J, Fang, Han, Gurtowski, James, Schatz, Michael C

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FROGS: Find, Rapidly, OTUs with Galaxy Solution von Escudié, Frédéric, Auer, Lucas, Bernard, Maria, Mariadassou, Mahendra, Cauquil, Laurent, Vidal, Katia, Maman, Sarah, Hernandez-Raquet, Guillermina, Combes, Sylvie, Pascal, Géraldine

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Predicting miRNA-disease association based on inductive matrix completion von Chen, Xing, Wang, Lei, Qu, Jia, Guan, Na-Na, Li, Jian-Qiang

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KMC 3: counting and manipulating k-mer statistics von Kokot, Marek, Dlugosz, Maciej, Deorowicz, Sebastian

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AnnotSV: an integrated tool for structural variations annotation von Geoffroy, Véronique, Herenger, Yvan, Kress, Arnaud, Stoetzel, Corinne, Piton, Amélie, Dollfus, Hélène, Muller, Jean

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KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies von Mapleson, Daniel, Garcia Accinelli, Gonzalo, Kettleborough, George, Wright, Jonathan, Clavijo, Bernardo J

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Lep-MAP3: robust linkage mapping even for low-coverage whole genome sequencing data von Rastas, Pasi

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IsoformSwitchAnalyzeR: analysis of changes in genome-wide patterns of alternative splicing and its functional consequences von Vitting-Seerup, Kristoffer, Sandelin, Albin

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SEED 2: a user-friendly platform for amplicon high-throughput sequencing data analyses von Větrovský, Tomáš, Baldrian, Petr, Morais, Daniel

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scVAE: variational auto-encoders for single-cell gene expression data von Grønbech, Christopher Heje, Vording, Maximillian Fornitz, Timshel, Pascal N, Sønderby, Casper Kaae, Pers, Tune H, Winther, Ole

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A Bayesian framework for multiple trait colocalization from summary association statistics von Giambartolomei, Claudia, Zhenli Liu, Jimmy, Zhang, Wen, Hauberg, Mads, Shi, Huwenbo, Boocock, James, Pickrell, Joe, Jaffe, Andrew E, Pasaniuc, Bogdan, Roussos, Panos

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SPRING: a kinetic interface for visualizing high dimensional single-cell expression data von Weinreb, Caleb, Wolock, Samuel, Klein, Allon M

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DEsingle for detecting three types of differential expression in single-cell RNA-seq data von Miao, Zhun, Deng, Ke, Wang, Xiaowo, Zhang, Xuegong

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OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs von Sethna, Zachary, Elhanati, Yuval, Callan, Curtis G, Walczak, Aleksandra M, Mora, Thierry

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TPMCalculator: one-step software to quantify mRNA abundance of genomic features von Vera Alvarez, Roberto, Pongor, Lorinc Sandor, Mariño-Ramírez, Leonardo, Landsman, David

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HiSCF: leveraging higher-order structures for clustering analysis in biological networks von Hu, Lun, Zhang, Jun, Pan, Xiangyu, Yan, Hong, You, Zhu-Hong

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SnapperDB: a database solution for routine sequencing analysis of bacterial isolates von Dallman, Timothy, Ashton, Philip, Schafer, Ulf, Jironkin, Aleksey, Painset, Anais, Shaaban, Sharif, Hartman, Hassan, Myers, Richard, Underwood, Anthony, Jenkins, Claire, Grant, Kathie

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