Training of Ecological Detection Dogs for Wolf Scat (Canis lupus) von VERVAECKE, Hilde, VAN KRUNKELSVEN, Ellen, VAN DEN BERGE, Koen

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Trajectory-based differential expression analysis for single-cell sequencing data von Van den Berge, Koen, Roux de Bézieux, Hector, Street, Kelly, Saelens, Wouter, Cannoodt, Robrecht, Saeys, Yvan, Dudoit, Sandrine, Clement, Lieven

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Role of mustelids in the life-cycle of ixodid ticks and transmission cycles of four tick-borne pathogens von Hofmeester, Tim R, Krawczyk, Aleksandra I, van Leeuwen, Arieke Docters, Fonville, Manoj, Montizaan, Margriet G E, van den Berge, Koen, Gouwy, Jan, Ruyts, Sanne C, Verheyen, Kris, Sprong, Hein

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satuRn: Scalable analysis of differential transcript usage for bulk and single-cell RNA-sequencing applications [version 2; peer review: 2 approved] von Gilis, Jeroen, Vitting-Seerup, Kristoffer, Van den Berge, Koen, Clement, Lieven

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stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage von Van den Berge, Koen, Soneson, Charlotte, Robinson, Mark D, Clement, Lieven

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Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications von Van den Berge, Koen, Perraudeau, Fanny, Soneson, Charlotte, Love, Michael I, Risso, Davide, Vert, Jean-Philippe, Robinson, Mark D, Dudoit, Sandrine, Clement, Lieven

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Trajectory inference across multiple conditions with condiments von Roux de Bézieux, Hector, Van den Berge, Koen, Street, Kelly, Dudoit, Sandrine

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Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia von Brann, David H, Tsukahara, Tatsuya, Weinreb, Caleb, Lipovsek, Marcela, Van den Berge, Koen, Gong, Boying, Chance, Rebecca, Macaulay, Iain C, Chou, Hsin-Jung, Fletcher, Russell B, Das, Diya, Street, Kelly, de Bezieux, Hector Roux, Choi, Yoon-Gi, Risso, Davide, Dudoit, Sandrine, Purdom, Elizabeth, Mill, Jonathan, Hachem, Ralph Abi, Matsunami, Hiroaki, Logan, Darren W, Goldstein, Bradley J, Grubb, Matthew S, Ngai, John, Datta, Sandeep Robert

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Training of ecological detection dogs for wolf scat (Canis lupus) von Vervaecke, Hilde, Van Krunkelsven, Ellen, Van den Berge, Koen

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Dietary composition and overlap among small‐ and medium‐sized carnivores in Flanders, Belgium von Van Den Berge, Koen, Veken, Timo, Gouwy, Jan, Verschelde, Pieter, Eeraerts, Maxime

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Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta von Bilcke, Gust, Van den Berge, Koen, De Decker, Sam, Bonneure, Eli, Poulsen, Nicole, Bulankova, Petra, Osuna-Cruz, Cristina Maria, Dickenson, Jack, Sabbe, Koen, Pohnert, Georg, Vandepoele, Klaas, Mangelinckx, Sven, Clement, Lieven, De Veylder, Lieven, Vyverman, Wim

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Strain-specific transcriptional responses overshadow salinity effects in a marine diatom sampled along the Baltic Sea salinity cline von Pinseel, Eveline, Nakov, Teofil, Van den Berge, Koen, Downey, Kala M., Judy, Kathryn J., Kourtchenko, Olga, Kremp, Anke, Ruck, Elizabeth C., Sjöqvist, Conny, Töpel, Mats, Godhe, Anna, Alverson, Andrew J.

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Improving replicability in single-cell RNA-Seq cell type discovery with Dune von Roux de Bézieux, Hector, Street, Kelly, Fischer, Stephan, Van den Berge, Koen, Chance, Rebecca, Risso, Davide, Gillis, Jesse, Ngai, John, Purdom, Elizabeth, Dudoit, Sandrine

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RNA Sequencing Data: Hitchhiker's Guide to Expression Analysis von Van den Berge, Koen, Hembach, Katharina M, Soneson, Charlotte, Tiberi, Simone, Clement, Lieven, Love, Michael I, Patro, Rob, Robinson, Mark D

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Consumption of game and pest species by small- and medium-sized carnivores von Van den Berge, Koen, Van Den Berge, Sanne, Van der Veken, Timo, Gouwy, Jan, Verschelde, Pieter, Eeraerts, Maxime

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Shifting dietary habits linked with contrasting population trends of two sympatric mustelids (Martes foina and Mustela putorius) over 16 years von Eeraerts, Maxime, Verschelde, Pieter, Gouwy, Jan, Van Den Berge, Sanne, Van Den Berge, Koen

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Distinctive Growth and Transcriptional Changes of the Diatom Seminavis robusta in Response to Quorum Sensing Related Compounds von Stock, Frederike, Bilcke, Gust, De Decker, Sam, Osuna-Cruz, Cristina Maria, Van den Berge, Koen, Vancaester, Emmelien, De Veylder, Lieven, Vandepoele, Klaas, Mangelinckx, Sven, Vyverman, Wim

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Prevalence of Fox Tapeworm in Invasive Muskrats in Flanders (North Belgium) von Cartuyvels, Emma, Adriaens, Tim, Baert, Kristof, Huysentruyt, Frank, Van Den Berge, Koen

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Trajectory inference across multiple conditions with condiments von de Bézieux, Hector Roux, Van den Berge, Koen, Street, Kelly, Dudoit, Sandrine

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A Guide to Trajectory Inference and RNA Velocity von Weiler, Philipp, Van den Berge, Koen, Street, Kelly, Tiberi, Simone

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