CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning von Chklovski, Alex, Parks, Donovan H., Woodcroft, Ben J., Tyson, Gene W.

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Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life von Parks, Donovan H., Rinke, Christian, Chuvochina, Maria, Chaumeil, Pierre-Alain, Woodcroft, Ben J., Evans, Paul N., Hugenholtz, Philip, Tyson, Gene W.

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Methane dynamics regulated by microbial community response to permafrost thaw von McCalley, Carmody K., Woodcroft, Ben J., Hodgkins, Suzanne B., Wehr, Richard A., Kim, Eun-Hae, Mondav, Rhiannon, Crill, Patrick M., Chanton, Jeffrey P., Rich, Virginia I., Tyson, Gene W., Saleska, Scott R.

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Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases von Priyam, Anurag, Woodcroft, Ben J, Rai, Vivek, Moghul, Ismail, Munagala, Alekhya, Ter, Filip, Chowdhary, Hiten, Pieniak, Iwo, Maynard, Lawrence J, Gibbins, Mark Anthony, Moon, HongKee, Davis-Richardson, Austin, Uludag, Mahmut, Watson-Haigh, Nathan S, Challis, Richard, Nakamura, Hiroyuki, Favreau, Emeline, Gómez, Esteban A, Pluskal, Tomás, Leonard, Guy, Rumpf, Wolfgang, Wurm, Yannick

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Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals von Bartel, David P, Grimson, Andrew, Srivastava, Mansi, Fahey, Bryony, Woodcroft, Ben J, Chiang, H. Rosaria, King, Nicole, Degnan, Bernard M, Rokhsar, Daniel S

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Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi von Boyd, Joel A., Jungbluth, Sean P., Leu, Andy O., Evans, Paul N., Woodcroft, Ben J., Chadwick, Grayson L., Orphan, Victoria J., Amend, Jan P., Rappé, Michael S., Tyson, Gene W.

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Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing von Trubl, Gareth, Jang, Ho Bin, Roux, Simon, Emerson, Joanne B, Solonenko, Natalie, Vik, Dean R, Solden, Lindsey, Ellenbogen, Jared, Runyon, Alexander T, Bolduc, Benjamin, Woodcroft, Ben J, Saleska, Scott R, Tyson, Gene W, Wrighton, Kelly C, Sullivan, Matthew B, Rich, Virginia I

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GroopM: an automated tool for the recovery of population genomes from related metagenomes von Imelfort, Michael, Parks, Donovan, Woodcroft, Ben J, Dennis, Paul, Hugenholtz, Philip, Tyson, Gene W

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Diverse sediment microbiota shape methane emission temperature sensitivity in Arctic lakes von Emerson, Joanne B., Varner, Ruth K., Wik, Martin, Parks, Donovan H., Neumann, Rebecca B., Johnson, Joel E., Singleton, Caitlin M., Woodcroft, Ben J., Tollerson, Rodney, Owusu-Dommey, Akosua, Binder, Morgan, Freitas, Nancy L., Crill, Patrick M., Saleska, Scott R., Tyson, Gene W., Rich, Virginia I.

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An evolving view of methane metabolism in the Archaea von Evans, Paul N., Boyd, Joel A., Leu, Andy O., Woodcroft, Ben J., Parks, Donovan H., Hugenholtz, Philip, Tyson, Gene W.

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Discovery of a novel methanogen prevalent in thawing permafrost von Mondav, Rhiannon, Woodcroft, Ben J., Kim, Eun-Hae, McCalley, Carmody K., Hodgkins, Suzanne B., Crill, Patrick M., Chanton, Jeffrey, Hurst, Gregory B., VerBerkmoes, Nathan C., Saleska, Scott R., Hugenholtz, Philip, Rich, Virginia I., Tyson, Gene W.

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The Widespread Prevalence and Functional Significance of Silk-Like Structural Proteins in Metazoan Biological Materials von McDougall, Carmel, Woodcroft, Ben J, Degnan, Bernard M

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Successional dynamics and alternative stable states in a saline activated sludge microbial community over 9 years von Wang, Yulin, Ye, Jun, Ju, Feng, Liu, Lei, Boyd, Joel A., Deng, Yu, Parks, Donovan H., Jiang, Xiaotao, Yin, Xiaole, Woodcroft, Ben J., Tyson, Gene W., Hugenholtz, Philip, Polz, Martin F., Zhang, Tong

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Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires von Schoelmerich, Marie C., Ly, Lynn, West-Roberts, Jacob, Shi, Ling-Dong, Shen, Cong, Malvankar, Nikhil S., Taib, Najwa, Gribaldo, Simonetta, Woodcroft, Ben J., Schadt, Christopher W., Al-Shayeb, Basem, Dai, Xiaoguang, Mozsary, Christopher, Hickey, Scott, He, Christine, Beaulaurier, John, Juul, Sissel, Sachdeva, Rohan, Banfield, Jillian F.

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Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus von Soo, Rochelle M, Woodcroft, Ben J, Parks, Donovan H, Tyson, Gene W, Hugenholtz, Philip

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Anaerobic methanotroph ‘Candidatus Methanoperedens nitroreducens’ has a pleomorphic life cycle von McIlroy, Simon J., Leu, Andy O., Zhang, Xueqin, Newell, Rhys, Woodcroft, Ben J., Yuan, Zhiguo, Hu, Shihu, Tyson, Gene W.

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GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes von Boyd, Joel A, Woodcroft, Ben J, Tyson, Gene W

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Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics von Rinke, Christian, Low, Serene, Woodcroft, Ben J, Raina, Jean-Baptiste, Skarshewski, Adam, Le, Xuyen H, Butler, Margaret K, Stocker, Roman, Seymour, Justin, Tyson, Gene W, Hugenholtz, Philip

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Methylotrophy in the Mire: direct and indirect routes for methane production in thawing permafrost von Ellenbogen, Jared B, Borton, Mikayla A, McGivern, Bridget B, Cronin, Dylan R, Hoyt, David W, Freire-Zapata, Viviana, McCalley, Carmody K, Varner, Ruth K, Crill, Patrick M, Wehr, Richard A, Chanton, Jeffrey P, Woodcroft, Ben J, Tfaily, Malak M, Tyson, Gene W, Rich, Virginia I, Wrighton, Kelly C

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Drug target prediction and prioritization: using orthology to predict essentiality in parasite genomes von Doyle, Maria A, Gasser, Robin B, Woodcroft, Ben J, Hall, Ross S, Ralph, Stuart A

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