Evolution of protein kinase substrate recognition at the active site von Bradley, David, Beltrao, Pedro

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Deep learning for protein structure prediction and design—progress and applications von Jänes, Jürgen, Beltrao, Pedro

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The functional landscape of the human phosphoproteome von Ochoa, David, Jarnuczak, Andrew F., Viéitez, Cristina, Gehre, Maja, Soucheray, Margaret, Mateus, André, Kleefeldt, Askar A., Hill, Anthony, Garcia-Alonso, Luz, Stein, Frank, Krogan, Nevan J., Savitski, Mikhail M., Swaney, Danielle L., Vizcaíno, Juan A., Noh, Kyung-Min, Beltrao, Pedro

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Exploring amino acid functions in a deep mutational landscape von Dunham, Alistair S, Beltrao, Pedro

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High-throughput deep learning variant effect prediction with Sequence UNET von Dunham, Alistair S, Beltrao, Pedro, AlQuraishi, Mohammed

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Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer’s disease risk genes von Schwartzentruber, Jeremy, Cooper, Sarah, Liu, Jimmy Z., Barrio-Hernandez, Inigo, Bello, Erica, Kumasaka, Natsuhiko, Young, Adam M. H., Franklin, Robin J. M., Johnson, Toby, Estrada, Karol, Gaffney, Daniel J., Beltrao, Pedro, Bassett, Andrew

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A structural biology community assessment of AlphaFold2 applications von Akdel, Mehmet, Pires, Douglas E. V., Pardo, Eduard Porta, Jänes, Jürgen, Zalevsky, Arthur O., Mészáros, Bálint, Bryant, Patrick, Good, Lydia L., Laskowski, Roman A., Pozzati, Gabriele, Shenoy, Aditi, Zhu, Wensi, Kundrotas, Petras, Serra, Victoria Ruiz, Rodrigues, Carlos H. M., Dunham, Alistair S., Burke, David, Borkakoti, Neera, Velankar, Sameer, Frost, Adam, Basquin, Jérôme, Lindorff-Larsen, Kresten, Bateman, Alex, Kajava, Andrey V., Valencia, Alfonso, Ovchinnikov, Sergey, Durairaj, Janani, Ascher, David B., Thornton, Janet M., Davey, Norman E., Stein, Amelie, Elofsson, Arne, Croll, Tristan I., Beltrao, Pedro

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Evolution and functional cross‐talk of protein post‐translational modifications von Beltrao, Pedro, Bork, Peer, Krogan, Nevan J., van Noort, Vera

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Uncovering Phosphorylation-Based Specificities through Functional Interaction Networks von Wagih, Omar, Sugiyama, Naoyuki, Ishihama, Yasushi, Beltrao, Pedro

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Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation von Swaney, Danielle L, Beltrao, Pedro, Starita, Lea, Guo, Ailan, Rush, John, Fields, Stanley, Krogan, Nevan J, Villén, Judit

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Major role of iron uptake systems in the intrinsic extra-intestinal virulence of the genus Escherichia revealed by a genome-wide association study von Galardini, Marco, Clermont, Olivier, Baron, Alexandra, Busby, Bede, Dion, Sara, Schubert, Soren, Beltrao, Pedro, Denamur, Erick

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Conserved phosphorylation hotspots in eukaryotic protein domain families von Strumillo, Marta J., Oplová, Michaela, Viéitez, Cristina, Ochoa, David, Shahraz, Mohammed, Busby, Bede P., Sopko, Richelle, Studer, Romain A., Perrimon, Norbert, Panse, Vikram G., Beltrao, Pedro

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The power of scientific collaborations and the future of structural biology von Beltrao, Pedro

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A resource of variant effect predictions of single nucleotide variants in model organisms von Wagih, Omar, Galardini, Marco, Busby, Bede P, Memon, Danish, Typas, Athanasios, Beltrao, Pedro

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Pan‐Cancer landscape of protein activities identifies drivers of signalling dysregulation and patient survival von Sousa, Abel, Dugourd, Aurelien, Memon, Danish, Petursson, Borgthor, Petsalaki, Evangelia, Saez‐Rodriguez, Julio, Beltrao, Pedro

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The impact of the genetic background on gene deletion phenotypes in Saccharomyces cerevisiae von Galardini, Marco, Busby, Bede P, Vieitez, Cristina, Dunham, Alistair S, Typas, Athanasios, Beltrao, Pedro

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Systematic Functional Prioritization of Protein Posttranslational Modifications von Beltrao, Pedro, Albanèse, Véronique, Kenner, Lillian R., Swaney, Danielle L., Burlingame, Alma, Villén, Judit, Lim, Wendell A., Fraser, James S., Frydman, Judith, Krogan, Nevan J.

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Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypotheses von Dugourd, Aurelien, Kuppe, Christoph, Sciacovelli, Marco, Gjerga, Enio, Gabor, Attila, Emdal, Kristina B., Vieira, Vitor, Bekker‐Jensen, Dorte B., Kranz, Jennifer, Bindels, Eric.M.J., Costa, Ana S.H., Sousa, Abel, Beltrao, Pedro, Rocha, Miguel, Olsen, Jesper V., Frezza, Christian, Kramann, Rafael, Saez‐Rodriguez, Julio

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Individual COVID‐19 disease trajectories revealed by plasma proteomics von Memon, Danish, Barrio‐Hernandez, Inigo, Beltrao, Pedro

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Sequence and Structure-Based Analysis of Specificity Determinants in Eukaryotic Protein Kinases von Bradley, David, Viéitez, Cristina, Rajeeve, Vinothini, Selkrig, Joel, Cutillas, Pedro R., Beltrao, Pedro

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