Whole-genome resequencing reveals loci under selection during chicken domestication von Carlborg, Örjan, Eriksson, Jonas, Andersson, Leif, Sherwood, Ellen, Jiang, Lin, Jensen, Per, Siegel, Paul, Zody, Michael C, Ingman, Max, Sharpe, Ted, Bed'hom, Bertrand, Meadows, Jennifer R. S, Tixier-Boichard, Michèle, Rubin, Carl-Johan, Ka, Sojeong, Lindblad-Toh, Kerstin, Hallböök, Finn, Besnier, Francois, Webster, Matthew T

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A high-density SNP panel reveals extensive diversity, frequent recombination and multiple recombination hotspots within the chicken major histocompatibility complex B region betwee... von Fulton, Janet E, McCarron, Amy M, Lund, Ashlee R, Pinegar, Kara N, Wolc, Anna, Chazara, Olympe, Bed'Hom, Bertrand, Berres, Mark, Miller, Marcia M

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The evolution of Sex-linked barring alleles in chickens involves both regulatory and coding changes in CDKN2A von Schwochow Thalmann, Doreen, Ring, Henrik, Sundström, Elisabeth, Cao, Xiaofang, Larsson, Mårten, Kerje, Susanne, Höglund, Andrey, Fogelholm, Jesper, Wright, Dominic, Jemth, Per, Hallböök, Finn, Bed'Hom, Bertrand, Dorshorst, Ben, Tixier-Boichard, Michèle, Andersson, Leif

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A frame-shift mutation in COMTD1 is associated with impaired pheomelanin pigmentation in chicken von Bi, Huijuan, Tranell, Jonas, Harper, Dawn C, Lin, Weifeng, Li, Jingyi, Hellström, Anders R, Larsson, Mårten, Rubin, Carl-Johan, Wang, Chao, Sayyab, Shumaila, Kerje, Susanne, Bed'hom, Bertrand, Gourichon, David, Ito, Shosuke, Wakamatsu, Kazumasa, Tixier-Boichard, Michèle, Marks, Michael S, Globisch, Daniel, Andersson, Leif

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Identification of the yellow skin gene reveals a hybrid origin of the domestic chicken von Eriksson, Jonas, Larson, Greger, Gunnarsson, Ulrika, Bed'hom, Bertrand, Tixier-Boichard, Michele, Strömstedt, Lina, Wright, Dominic, Jungerius, Annemieke, Vereijken, Addie, Randi, Ettore, Jensen, Per, Andersson, Leif

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Comparative analysis of the caecal tonsil transcriptome in two chicken lines experimentally infected with Salmonella Enteritidis von Cazals, Anaïs, Rau, Andrea, Estellé, Jordi, Bruneau, Nicolas, Coville, Jean-Luc, Menanteau, Pierrette, Rossignol, Marie-Noëlle, Jardet, Deborah, Bevilacqua, Claudia, Bed'Hom, Bertrand, Velge, Philippe, Calenge, Fanny

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Chicken domestication: From archeology to genomics von Tixier-Boichard, Michèle, Bed’hom, Bertrand, Rognon, Xavier

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A missense mutation in TYRP1 causes the chocolate plumage color in chicken and alters melanosome structure von Li, Jingyi, Bed’hom, Bertrand, Marthey, Sylvain, Valade, Mathieu, Dureux, Audrey, Moroldo, Marco, Péchoux, Christine, Coville, Jean‐Luc, Gourichon, David, Vieaud, Agathe, Dorshorst, Ben, Andersson, Leif, Tixier‐Boichard, Michèle

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The feather pattern autosomal barring in chicken is strongly associated with segregation at the MC1R locus von Schwochow, Doreen, Bornelöv, Susanne, Jiang, Tingxing, Li, Jingyi, Gourichon, David, Bed’Hom, Bertrand, Dorshorst, Ben J., Chuong, Cheng‐Ming, Tixier‐Boichard, Michèle, Andersson, Leif

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Caecal microbiota composition of experimental inbred MHC-B lines infected with IBV differs according to genetics and vaccination von Borey, Marion, Bed’Hom, Bertrand, Bruneau, Nicolas, Estellé, Jordi, Larsen, Frederik, Blanc, Fany, der Laan, Marie-Hélène Pinard-van, Dalgaard, Tina, Calenge, Fanny

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Assessment of trade-offs between feed efficiency, growth-related traits, and immune activity in experimental lines of layer chickens von Zerjal, Tatiana, Hartle, Sonja, Gourichon, David, Guillory, Vanaique, Bruneau, Nicolas, Laloe, Denis, van der Laan, Marie-Helene, Trapp, Sascha, Bed'hom, Bertrand, Quere, Pascale

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Quantitative effect of a CNV on a morphological trait in chickens von Moro, Céline, Cornette, Raphaël, Vieaud, Agathe, Bruneau, Nicolas, Gourichon, David, Bed'hom, Bertrand, Tixier-Boichard, Michèle

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RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific Expression in Livestock Sp... von Jehl, Frederic, Degalez, Fabien, Bernard, Maria, Lecerf, Frederic, Lagoutte, Laetitia, Desert, Colette, Coulee, Manon, Bouchez, Olivier, Leroux, Sophie, Abasht, Behnam, Tixier-Boichard, Michele, Bed'hom, Bertrand, Burlot, Thierry, Gourichon, David, Bardou, Philippe, Acloque, Herve, Foissac, Sylvain, Djebali, Sarah, Giuffra, Elisabetta, Zerjal, Tatiana, Pitel, Frederique, Klopp, Christophe, Lagarrigue, Sandrine

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Genetic diversity of MHC-B in 12 chicken populations in Korea revealed by single-nucleotide polymorphisms von Manjula, Prabuddha, Bed’Hom, Bertrand, Hoque, Md Rashedul, Cho, Sunghyun, Seo, Dongwon, Chazara, Olympe, Lee, Seung Hwan, Lee, Jun Heon

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Dispersal history of a globally introduced carnivore, the small Indian mongoose Urva auropunctata, with an emphasis on the Caribbean region von Louppe, Vivien, Lalis, Aude, Abdelkrim, Jawad, Baron, Juliette, Bed’Hom, Bertrand, Becker, Anne A. M. J., Catzeflis, François, Lorvelec, Olivier, Zieger, Ulrike, Veron, Géraldine

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Differences in caecal microbiota composition and Salmonella carriage between experimentally infected inbred lines of chickens von Cazals, Anaïs, Estellé, Jordi, Bruneau, Nicolas, Coville, Jean-Luc, Menanteau, Pierrette, Rossignol, Marie-Noëlle, Jardet, Deborah, Bevilacqua, Claudia, Rau, Andrea, Bed'Hom, Bertrand, Velge, Philippe, Calenge, Fanny

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Identification and tissue-expression profiling of novel chicken c-type lectin-like domain containing proteins as potential targets for carbohydrate-based vaccine strategies von Larsen, Frederik T., Bed’Hom, Bertrand, Guldbrandtsen, Bernt, Dalgaard, Tina S.

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Improved Basic Cytogenetics Challenges Holocentricity of Butterfly Chromosomes von Dutrillaux, Bernard, Dutrillaux, Anne-Marie, McClure, Mélanie, Gèze, Marc, Elias, Marianne, Bed’hom, Bertrand

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Copy number variation in intron 1 of SOX5 causes the Pea-comb phenotype in chickens von Wright, Dominic, Boije, Henrik, Meadows, Jennifer R S, Bed'hom, Bertrand, Gourichon, David, Vieaud, Agathe, Tixier-Boichard, Michèle, Rubin, Carl-Johan, Imsland, Freyja, Hallböök, Finn, Andersson, Leif

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A Reference Genome Assembly for the Spotted Flycatcher (Muscicapa striata) von Baudrin, Gaspard, Pons, Jean-Marc, Bed’Hom, Bertrand, Gil, Lisa, Boyer, Roxane, Dusabyinema, Yves, Jiguet, Frédéric, Fuchs, Jérôme

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