Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer von Pearson, Talima, Giffard, Philip, Beckstrom-Sternberg, Stephen, Auerbach, Raymond, Hornstra, Heidie, Tuanyok, Apichai, Price, Erin P, Glass, Mindy B, Leadem, Benjamin, Beckstrom-Sternberg, James S, Allan, Gerard J, Foster, Jeffrey T, Wagner, David M, Okinaka, Richard T, Sim, Siew Hoon, Pearson, Ofori, Wu, Zaining, Chang, Jean, Kaul, Rajinder, Hoffmaster, Alex R, Brettin, Thomas S, Robison, Richard A, Mayo, Mark, Gee, Jay E, Tan, Patrick, Currie, Bart J, Keim, Paul

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Incongruence between multi‐locus sequence analysis (MLSA) and whole‐genome‐based phylogenies: Pseudomonas syringae pathovar pisi as a cautionary tale von Baltrus, David A, Dougherty, Kevin, Beckstrom‐Sternberg, Stephen M, Beckstrom‐Sternberg, James S, Foster, Jeffrey T

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Molecular basis of rare aminoglycoside susceptibility and pathogenesis of Burkholderia pseudomallei clinical isolates from Thailand von Trunck, Lily A, Propst, Katie L, Wuthiekanun, Vanaporn, Tuanyok, Apichai, Beckstrom-Sternberg, Stephen M, Beckstrom-Sternberg, James S, Peacock, Sharon J, Keim, Paul, Dow, Steven W, Schweizer, Herbert P

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Whole-Genome-Based Phylogeny and Divergence of the Genus Brucella von Foster, Jeffrey T, Beckstrom-Sternberg, Stephen M, Pearson, Talima, Beckstrom-Sternberg, James S, Chain, Patrick S G, Roberto, Francisco F, Hnath, Jonathan, Brettin, Tom, Keim, Paul

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Phylogeography of Francisella tularensis: Global Expansion of a Highly Fit Clone von VOGLER, Amy J, BIRDSELL, Dawn, PETERSEN, Jeannine M, PEARSON, Talima, VAISSAIRE, Josée, DEMPSEY, Michael P, FOXALL, Paul, ENGELTHALER, David M, WAGNER, David M, KEIM, Paul, PRICE, Lance B, BOWERS, Jolene R, BECKSTROM-STERNBERG, Stephen M, AUERBACH, Raymond K, BECKSTROM-STERNBERG, James S, JOHANSSON, Anders, CLARE, Ashley, BUCHHAGEN, Jordan L

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Genomic islands from five strains of Burkholderia pseudomallei von Tuanyok, Apichai, Leadem, Benjamin R, Auerbach, Raymond K, Beckstrom-Sternberg, Stephen M, Beckstrom-Sternberg, James S, Mayo, Mark, Wuthiekanun, Vanaporn, Brettin, Thomas S, Nierman, William C, Peacock, Sharon J, Currie, Bart J, Wagner, David M, Keim, Paul

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Next-generation sequencing of Coccidioides immitis isolated during cluster investigation von Engelthaler, David M, Chiller, Tom, Schupp, James A, Colvin, Joshua, Beckstrom-Sternberg, Stephen M, Driebe, Elizabeth M, Moses, Tracy, Tembe, Waibhav, Sinari, Shripad, Beckstrom-Sternberg, James S, Christoforides, Alexis, Pearson, John V, Carpten, John, Keim, Paul, Peterson, Ashley, Terashita, Dawn, Balajee, S Arunmozhi

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Phylogeography of Francisella tularensis subspecies holarctica from the country of Georgia von Chanturia, Gvantsa, Birdsell, Dawn N, Kekelidze, Merab, Zhgenti, Ekaterine, Babuadze, George, Tsertsvadze, Nikoloz, Tsanava, Shota, Imnadze, Paata, Beckstrom-Sternberg, Stephen M, Beckstrom-Sternberg, James S, Champion, Mia D, Sinari, Shripad, Gyuranecz, Miklos, Farlow, Jason, Pettus, Amanda H, Kaufman, Emily L, Busch, Joseph D, Pearson, Talima, Foster, Jeffrey T, Vogler, Amy J, Wagner, David M, Keim, Paul

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Complete genomic characterization of a pathogenic A.II strain of Francisella tularensis subspecies tularensis von Beckstrom-Sternberg, Stephen M, Auerbach, Raymond K, Godbole, Shubhada, Pearson, John V, Beckstrom-Sternberg, James S, Deng, Zuoming, Munk, Christine, Kubota, Kristy, Zhou, Yan, Bruce, David, Noronha, Jyothi, Scheuermann, Richard H, Wang, Aihui, Wei, Xianying, Wang, Jianjun, Hao, Jicheng, Wagner, David M, Brettin, Thomas S, Brown, Nancy, Gilna, Paul, Keim, Paul S

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When Outgroups Fail; Phylogenomics of Rooting the Emerging Pathogen, Coxiella burnetii von Pearson, Talima, Hornstra, Heidie M., Sahl, Jason W., Schaack, Sarah, Schupp, James M., Beckstrom-Sternberg, Stephen M., O'Neill, Matthew W., Priestley, Rachael A., Champion, Mia D., Beckstrom-Sternberg, James S., Kersh, Gilbert J., Samuel, James E., Massung, Robert F., Keim, Paul

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Development of a rapid, cost-effective TaqMan Real-Time PCR Assay for identification and differentiation of Coccidioides immitis and Coccidioides posadasii von Sheff, Kelly W., York, Emily R., Driebe, Elizabeth M., Barker, Bridget M., Rounsley, Steven D., Waddell, Victor G., Beckstrom-Sternberg, Stephen M., Beckstrom-Sternberg, James S., Keim, Paul S., Engelthaler, David M.

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Incongruence between multi‐locus sequence analysis ( MLSA ) and whole‐genome‐based phylogenies: P seudomonas syringae pathovar pisi as a cautionary tale von Baltrus, David A., Dougherty, Kevin, Beckstrom‐Sternberg, Stephen M., Beckstrom‐Sternberg, James S., Foster, Jeffrey T.

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Thyroid hormone-dependent development in Xenopus laevis : A sensitive screen of thyroid hormone signaling disruption by municipal wastewater treatment plant effluent von Searcy, Brian T, Beckstrom-Sternberg, Stephen M, Beckstrom-Sternberg, James S, Stafford, Phillip, Schwendiman, Angela L, Soto-Pena, Jenifer, Owen, Michael C, Ramirez, Claire, Phillips, Joel, Veldhoen, Nik, Helbing, Caren C, Propper, Catherine R

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Data from: When outgroups fail; phylogenomics of rooting the emerging pathogen, Coxiella burnetii von Pearson, Talima, Hornstra, Heidie M., Sahl, Jason W., Schaack, Sarah, Schupp, James M., Beckstrom-Sternberg, Stephen M., O'Neill, Matthew W., Priestley, Rachael A., Champion, Mia D., Beckstrom-Sternberg, James S., Kersh, Gilbert J., Samuel, James E., Massung, Robert F., Keim, Paul

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Supplementary Information S1 von Pearson, Talima, Hornstra, Heidie M., Sahl, Jason W., Schaack, Sarah, Schupp, James M., Beckstrom-Sternberg, Stephen M., O'Neill, Matthew W., Priestley, Rachael A., Champion, Mia D., Beckstrom-Sternberg, James S., Kersh, Gilbert J., Samuel, James E., Massung, Robert F., Keim, Paul

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SupportingInformationS3 von Pearson, Talima, Hornstra, Heidie M., Sahl, Jason W., Schaack, Sarah, Schupp, James M., Beckstrom-Sternberg, Stephen M., O'Neill, Matthew W., Priestley, Rachael A., Champion, Mia D., Beckstrom-Sternberg, James S., Kersh, Gilbert J., Samuel, James E., Massung, Robert F., Keim, Paul

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SupportinglnformationS2 von Pearson, Talima, Hornstra, Heidie M., Sahl, Jason W., Schaack, Sarah, Schupp, James M., Beckstrom-Sternberg, Stephen M., O'Neill, Matthew W., Priestley, Rachael A., Champion, Mia D., Beckstrom-Sternberg, James S., Kersh, Gilbert J., Samuel, James E., Massung, Robert F., Keim, Paul

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Comparative Phylogenomics and Evolution of the Brucellae Reveal a Path to Virulence von Wattam, Alice R, Foster, Jeffrey T, Mane, Shrinivasrao P, Beckstrom-Sternberg, Stephen M, Beckstrom-Sternberg, James M, Dickerman, Allan W, Keim, Paul, Pearson, Talima, Shukla, Maulik, Ward, Doyle V, Williams, Kelly P, Sobral, Bruno W, Tsolis, Renee M, Whatmore, Adrian M, O'Callaghan, David

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Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe von Price, Erin P, Seymour, Meagan L, Sarovich, Derek S, Latham, Jennie, Wolken, Spenser R, Mason, Joanne, Vincent, Gemma, Drees, Kevin P, Beckstrom-Sternberg, Stephen M, Phillippy, Adam M, Koren, Sergey, Okinaka, Richard T, Chung, Wai-Kwan, Schupp, James M, Wagner, David M, Vipond, Richard, Foster, Jeffrey T, Bergman, Nicholas H, Burans, James, Pearson, Talima, Brooks, Tim, Keim, Paul

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Copy number and targeted mutational analysis reveals novel somatic events in metastatic prostate tumors von Robbins, Christiane M, Tembe, Waibov A, Baker, Angela, Sinari, Shripad, Moses, Tracy Y, Beckstrom-Sternberg, Stephen, Beckstrom-Sternberg, James, Barrett, Michael, Long, James, Chinnaiyan, Arul, Lowey, James, Suh, Edward, Pearson, John V, Craig, David W, Agus, David B, Pienta, Kenneth J, Carpten, John D

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