Continuum and Atomistic Modeling of Ion Partitioning into a Peptide Nanotube von Asthagiri, D., Bashford, D.

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Exploring protein native states and large-scale conformational changes with a modified generalized born model von Onufriev, Alexey, Bashford, Donald, Case, David A.

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A Theoretical Study of the UV/Visible Absorption and Emission Solvatochromic Properties of Solvent-Sensitive Dyes von Han, Wen-Ge, Liu, Tiqing, Himo, Fahmi, Toutchkine, Alexei, Bashford, Donald, Hahn, Klaus M., Noodleman, Louis

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Conformation and hydrogen ion titration of proteins: a continuum electrostatic model with conformational flexibility von You, T.J., Bashford, D.

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Density Functional Vertical Self-Consistent Reaction Field Theory for Solvatochromism Studies of Solvent-Sensitive Dyes von Liu, Tiqing, Han, Wen-Ge, Himo, Fahmi, Ullmann, G. Matthias, Bashford, Donald, Toutchkine, Alexei, Hahn, Klaus M, Noodleman, Louis

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A Supersymmetric Model for the Evolution of the Genetic Code von Bashford, J. D., Tsohantjis, I., Jarvis, P. D.

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Effective Born radii in the generalized Born approximation: The importance of being perfect von Onufriev, Alexey, Case, David A., Bashford, Donald

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Modification of the Generalized Born Model Suitable for Macromolecules von Onufriev, Alexey, Bashford, Donald, Case, David A

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Generalized born models of macromolecular solvation effects von Bashford, D, Case, D A

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An object-oriented programming suite for electrostatic effects in biological molecules An experience report on the MEAD project von Bashford, Donald

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Salerno's model of DNA re-analysed: could breather solitons have biological significance? von Bashford, J D

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A base-pairing model of duplex formation. I. Watson-Crick pairing geometries von Bashford, J.D., Jarvis, P.D.

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Incorporating solvation effects into density functional theory: Calculation of absolute acidities von Richardson, W. H., Peng, C., Bashford, D., Noodleman, L., Case, D. A.

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Electrostatic coupling to pH‐titrating sites as a source of cooperativity in protein‐ligand binding von Spassov, Velin, Bashford, Donald

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An algebraic model of RNA duplex formation von Bashford, J. D., Jarvis, P. D.

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The genetic code as a periodic table: algebraic aspects von Bashford, J.D., Jarvis, P.D.

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All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins von MacKerell, A. D, Bashford, D, Bellott, M, Dunbrack, R. L, Evanseck, J. D, Field, M. J, Fischer, S, Gao, J, Guo, H, Ha, S, Joseph-McCarthy, D, Kuchnir, L, Kuczera, K, Lau, F. T. K, Mattos, C, Michnick, S, Ngo, T, Nguyen, D. T, Prodhom, B, Reiher, W. E, Roux, B, Schlenkrich, M, Smith, J. C, Stote, R, Straub, J, Watanabe, M, Wiórkiewicz-Kuczera, J, Yin, D, Karplus, M

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Short-term responses of ground-active beetles to alternative silvicultural systems in the Warra Silvicultural Systems Trial, Tasmania, Australia von Baker, Susan C., Grove, Simon J., Forster, Lynne, Bonham, Kevin J., Bashford, Dick

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pKa's of ionizable groups in proteins: atomic detail from a continuum electrostatic model von Bashford, Donald, Karplus, Martin

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ELECTROSTATIC CALCULATIONS OF THE PKA VALUES OF IONIZABLE GROUPS IN BACTERIORHODOPSIN von BASHFORD, D, GERWERT, K

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