Cis-regulatory atlas of primary human CD4+ T cells von Stefan, Kurtis, Barski, Artem

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Attenuated chromatin compartmentalization in meiosis and its maturation in sperm development von Alavattam, Kris G., Maezawa, So, Sakashita, Akihiko, Khoury, Haia, Barski, Artem, Kaplan, Noam, Namekawa, Satoshi H.

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BioWardrobe: an integrated platform for analysis of epigenomics and transcriptomics data von Kartashov, Andrey V, Barski, Artem

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Genomic location analysis by ChIP-Seq von Barski, Artem, Zhao, Keji

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Genome-wide Mapping of HATs and HDACs Reveals Distinct Functions in Active and Inactive Genes von Wang, Zhibin, Zang, Chongzhi, Cui, Kairong, Schones, Dustin E., Barski, Artem, Peng, Weiqun, Zhao, Keji

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Dynamic reorganization of open chromatin underlies diverse transcriptomes during spermatogenesis von Maezawa, So, Yukawa, Masashi, Alavattam, Kris G, Barski, Artem, Namekawa, Satoshi H

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High-Resolution Profiling of Histone Methylations in the Human Genome von Barski, Artem, Cuddapah, Suresh, Cui, Kairong, Roh, Tae-Young, Schones, Dustin E., Wang, Zhibin, Wei, Gang, Chepelev, Iouri, Zhao, Keji

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Dynamic Regulation of Nucleosome Positioning in the Human Genome von Schones, Dustin E., Cui, Kairong, Cuddapah, Suresh, Roh, Tae-Young, Barski, Artem, Wang, Zhibin, Wei, Gang, Zhao, Keji

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Combinatorial patterns of histone acetylations and methylations in the human genome von Wang, Zhibin, Zang, Chongzhi, Rosenfeld, Jeffrey A, Schones, Dustin E, Barski, Artem, Cuddapah, Suresh, Cui, Kairong, Roh, Tae-Young, Peng, Weiqun, Zhang, Michael Q, Zhao, Keji

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Runx Transcription Factors in T Cells-What Is Beyond Thymic Development? von Korinfskaya, Svetlana, Parameswaran, Sreeja, Weirauch, Matthew T, Barski, Artem

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TSLP signaling in CD4 + T cells programs a pathogenic T helper 2 cell state von Rochman, Yrina, Dienger-Stambaugh, Krista, Richgels, Phoebe K, Lewkowich, Ian P, Kartashov, Andrey V, Barski, Artem, Khurana Hershey, Gurjit K, Leonard, Warren J, Singh, Harinder

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Super-enhancer switching drives a burst in gene expression at the mitosis-to-meiosis transition von Maezawa, So, Sakashita, Akihiko, Yukawa, Masashi, Chen, Xiaoting, Takahashi, Kazuki, Alavattam, Kris G., Nakata, Ippo, Weirauch, Matthew T., Barski, Artem, Namekawa, Satoshi H.

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maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks von Cazares, Tareian A, Rizvi, Faiz W, Iyer, Balaji, Chen, Xiaoting, Kotliar, Michael, Bejjani, Anthony T, Wayman, Joseph A, Donmez, Omer, Wronowski, Benjamin, Parameswaran, Sreeja, Kottyan, Leah C, Barski, Artem, Weirauch, Matthew T, Prasath, V B Surya, Miraldi, Emily R

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Induction of Interleukin-9-Producing Mucosal Mast Cells Promotes Susceptibility to IgE-Mediated Experimental Food Allergy von Chen, Chun-Yu, Lee, Jee-Boong, Liu, Bo, Ohta, Shoichiro, Wang, Pin-Yi, Kartashov, Andrey V., Mugge, Luke, Abonia, J. Pablo, Barski, Artem, Izuhara, Kenji, Rothenberg, Marc E., Finkelman, Fred D., Hogan, Simon P., Wang, Yui-Hsi

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Polycomb protein SCML2 facilitates H3K27me3 to establish bivalent domains in the male germline von Maezawa, So, Hasegawa, Kazuteru, Yukawa, Masashi, Kubo, Naoki, Sakashita, Akihiko, Alavattam, Kris G., Sin, Ho-Su, Kartashov, Andrey V., Sasaki, Hiroyuki, Barski, Artem, Namekawa, Satoshi H.

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Polycomb directs timely activation of germline genes in spermatogenesis von Maezawa, So, Hasegawa, Kazuteru, Yukawa, Masashi, Sakashita, Akihiko, Alavattam, Kris G, Andreassen, Paul R, Vidal, Miguel, Koseki, Haruhiko, Barski, Artem, Namekawa, Satoshi H

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Genomic integration of Wnt/β-catenin and BMP/Smad1 signaling coordinates foregut and hindgut transcriptional programs von Stevens, Mariana L, Chaturvedi, Praneet, Rankin, Scott A, Macdonald, Melissa, Jagannathan, Sajjeev, Yukawa, Masashi, Barski, Artem, Zorn, Aaron M

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SCML2 promotes heterochromatin organization in late spermatogenesis von Maezawa, So, Hasegawa, Kazuteru, Alavattam, Kris G, Funakoshi, Mayuka, Sato, Taiga, Barski, Artem, Namekawa, Satoshi H

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FOXF1 is required for the oncogenic properties of PAX3-FOXO1 in rhabdomyosarcoma von Milewski, David, Shukla, Samriddhi, Gryder, Berkley E., Pradhan, Arun, Donovan, Johnny, Sudha, Parvathi, Vallabh, Sushmitha, Pyros, Athena, Xu, Yan, Barski, Artem, Szabo, Sara, Turpin, Brian, Pressey, Joseph G., Millay, Douglas P., Khan, Javed, Kalinichenko, Vladimir V., Kalin, Tanya V.

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SCML2 Establishes the Male Germline Epigenome through Regulation of Histone H2A Ubiquitination von Hasegawa, Kazuteru, Sin, Ho-Su, Maezawa, So, Broering, Tyler J., Kartashov, Andrey V., Alavattam, Kris G., Ichijima, Yosuke, Zhang, Fan, Bacon, W. Clark, Greis, Kenneth D., Andreassen, Paul R., Barski, Artem, Namekawa, Satoshi H.

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