Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa von Shahin, Arwa, van Kaauwen, Martijn, Esselink, Danny, Bargsten, Joachim W, van Tuyl, Jaap M, Visser, Richard G F, Arens, Paul

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Snf2 family gene distribution in higher plant genomes reveals DRD1 expansion and diversification in the tomato genome von Bargsten, Joachim W, Folta, Adam, Mlynárová, Ludmila, Nap, Jan-Peter

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Prioritization of candidate genes in QTL regions based on associations between traits and biological processes von Bargsten, Joachim W, Nap, Jan-Peter, Sanchez-Perez, Gabino F, van Dijk, Aalt D J

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Structural homology in the Solanaceae: analysis of genomic regions in support of synteny studies in tomato, potato and pepper von Peters, Sander A, Bargsten, Joachim W, Szinay, Dóra, van de Belt, José, Visser, Richard G.F, Bai, Yuling, de Jong, Hans

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Compact tomato seedlings and plants upon overexpression of a tomato chromatin remodelling ATPase gene von Folta, Adam, Bargsten, Joachim W, Bisseling, Ton, Nap, Jan‐Peter, Mlynarova, Ludmila

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Unexpectedly rapid IS1 transposition into an Arabidopsis chromatin remodeling gene von Rogowski, Karol J, Folta, Adam, Bargsten, Joachim W, Nap, Jan-Peter, Mlynarova, Ludmila

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An expanded evaluation of protein function prediction methods shows an improvement in accuracy von Jiang, Yuxiang, Oron, Tal Ronnen, Clark, Wyatt T, Bankapur, Asma R, D'Andrea, Daniel, Lepore, Rosalba, Funk, Christopher S, Kahanda, Indika, Verspoor, Karin M, Ben-Hur, Asa, Koo, Da Chen Emily, Penfold-Brown, Duncan, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sahraeian, Sayed M E, Martelli, Pier Luigi, Profiti, Giuseppe, Casadio, Rita, Cao, Renzhi, Zhong, Zhaolong, Cheng, Jianlin, Altenhoff, Adrian, Skunca, Nives, Dessimoz, Christophe, Dogan, Tunca, Hakala, Kai, Kaewphan, Suwisa, Mehryary, Farrokh, Salakoski, Tapio, Ginter, Filip, Fang, Hai, Smithers, Ben, Oates, Matt, Gough, Julian, Törönen, Petri, Koskinen, Patrik, Holm, Liisa, Chen, Ching-Tai, Hsu, Wen-Lian, Bryson, Kevin, Cozzetto, Domenico, Minneci, Federico, Jones, David T, Chapman, Samuel, Bkc, Dukka, Khan, Ishita K, Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Stern, Amos, Cibrian-Uhalte, Elena, Denny, Paul, Foulger, Rebecca E, Hieta, Reija, Legge, Duncan, Lovering, Ruth C, Magrane, Michele, Melidoni, Anna N, Mutowo-Meullenet, Prudence, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, ElShal, Sarah, Tranchevent, Léon-Charles, Das, Sayoni, Dawson, Natalie L, Lee, David, Lees, Jonathan G, Sillitoe, Ian, Bhat, Prajwal, Nepusz, Tamás, Romero, Alfonso E, Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Gillis, Jesse, Sedeño-Cortés, Adriana E, Pavlidis, Paul, Feng, Shou, Cejuela, Juan M, Goldberg, Tatyana, Hamp, Tobias, Richter, Lothar, Salamov, Asaf, Gabaldon, Toni, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Ning, Wei, Zhou, Yuanpeng, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Toppo, Stefano, Ferrari, Carlo, Giollo, Manuel

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Biological process annotation of proteins across the plant kingdom von Bargsten, Joachim W., Severing, Edouard I., Nap, Jan-Peter, Sanchez-Perez, Gabino F., van Dijk, Aalt D.J.

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The LAILAPS Search Engine: Relevance Ranking in Life Science Databases von Lange, Matthias, Spies, Karl, Bargsten, Joachim, Haberhauer, Gregor, Klapperstück, Matthias, Leps, Michael, Weinel, Christian, Wünschiers, Röbbe, Weißbach, Mandy, Stein, Jens, Scholz, Uwe

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Compact tomato seedlings and plants upon overexpression of a tomato chromatin remodelling ATP ase gene von Folta, Adam, Bargsten, Joachim W., Bisseling, Ton, Nap, Jan‐Peter, Mlynarova, Ludmila

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Genomic analysis of the native European Solanum species, S. dulcamara von D'Agostino, Nunzio, Golas, Tomek, van de Geest, Henri, Bombarely, Aureliano, Dawood, Thikra, Zethof, Jan, Driedonks, Nicky, Wijnker, Erik, Bargsten, Joachim, Nap, Jan-Peter, Mariani, Celestina, Rieu, Ivo

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Snf2 Family Gene Distribution in Higher Plant Genomes Reveals DRD1 Expansion and Diversification in the Tomato Genome: e81147 von Bargsten, Joachim W, Folta, Adam, Mlynarova, Ludmila, Nap, Jan-Peter

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An expanded evaluation of protein function prediction methods shows an improvement in accuracy von Jiang, Yuxiang, Clark, Wyatt T, Bankapur, Asma R, Kahanda, Indika, Verspoor, Karin M, Ben-Hur, Asa, Koo, Da Chen Emily, Penfold-Brown, Duncan, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sahraeian, Sayed M. E, Casadio, Rita, Cao, Renzhi, Altenhoff, Adrian, Dogan, Tunca, Hakala, Kai, Mehryary, Farrokh, Salakoski, Tapio, Oates, Matt, Gough, Julian, Koskinen, Patrik, Chen, Ching-Tai, Hsu, Wen-Lian, Bryson, Kevin, Cozzetto, Domenico, Minneci, Federico, Jones, David T, Chapman, Samuel, Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Cibrian-Uhalte, Elena, Denny, Paul, Foulger, Rebecca E, Legge, Duncan, Melidoni, Anna N, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, Tranchevent, Léon-Charles, Das, Sayoni, Dawson, Natalie L, Lee, David, Lees, Jonathan G, Sillitoe, Ian, Romero, Alfonso E, Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Pavlidis, Paul, Goldberg, Tatyana, Hamp, Tobias, Richter, Lothar, Salamov, Asaf, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Falda, Marco, Fontana, Paolo, Ferrari, Carlo, Giollo, Manuel, Tosatto, Silvio C.E, del Pozo, Angela, Fernández, José M, Tress, Michael L, Di Carlo, Stefano, Politano, Gianfranco, Savino, Alessandro, Rehman, Hafeez Ur, Valentini, Giorgio, Bargsten, Joachim W, van Dijk, Aalt D. J, Gemovic, Branislava, Glisic, Sanja, Perovic, Vladmir, Veljkovic, Veljko, Veljkovic, Nevena, Almeida-e-Silva, Danillo C, Sharan, Malvika, Vogel, Jörg, Zhang, Shanshan, Vucetic, Slobodan, Wang, Zheng, Sternberg, Michael J. E, Wass, Mark N, Huntley, Rachael P, Martin, Maria J, Robinson, Peter N, Moreau, Yves, Babbitt, Patricia C, Brenner, Steven E, Linial, Michal, Orengo, Christine A, Rost, Burkhard, Greene, Casey S, Mooney, Sean D, Friedberg, Iddo

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The LAILAPS Search Engine: Relevance Ranking in Life Science Databases von Lange, Matthias, Spies, Karl, Bargsten, Joachim, Haberhauer, Gregor, Klapperstück, Matthias, Leps, Michael, Weinel, Christian, Wünschiers, Röbbe, Weißbach, Mandy, Stein, Jens, Scholz, Uwe

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An expanded evaluation of protein function prediction methods shows an improvement in accuracy von Jiang, Yuxiang, Clark, Wyatt T, Bankapur, Asma R, D'Andrea, Daniel, Kahanda, Indika, Verspoor, Karin M, Ben-Hur, Asa, Koo, Da Chen Emily, Penfold-Brown, Duncan, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sahraeian, Sayed ME, Casadio, Rita, Cao, Renzhi, Altenhoff, Adrian, Dogan, Tunca, Hakala, Kai, Mehryary, Farrokh, Salakoski, Tapio, Oates, Matt, Gough, Julian, Koskinen, Patrik, Chen, Ching-Tai, Hsu, Wen-Lian, Bryson, Kevin, Cozzetto, Domenico, Minneci, Federico, Jones, David T, Chapman, Samuel, Bkc, Dukka, Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Cibrian-Uhalte, Elena, Denny, Paul, Foulger, Rebecca E, Legge, Duncan, Melidoni, Anna N, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, Tranchevent, Léon-Charles, Das, Sayoni, Dawson, Natalie L, Lee, David, Lees, Jonathan G, Sillitoe, Ian, Romero, Alfonso E, Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Goldberg, Tatyana, Hamp, Tobias, Richter, Lothar, Salamov, Asaf, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Falda, Marco, Fontana, Paolo, Ferrari, Carlo, Giollo, Manuel, Fernández, José M, Tress, Michael L, Di Carlo, Stefano, Politano, Gianfranco, Savino, Alessandro, Rehman, Hafeez Ur, Valentini, Giorgio, Bargsten, Joachim W, van Dijk, Aalt DJ, Gemovic, Branislava, Glisic, Sanja, Perovic, Vladmir, Veljkovic, Veljko, Veljkovic, Nevena, Almeida-E-Silva, Danillo C, Vencio, Ricardo ZN, Sharan, Malvika, Vogel, Jörg, Zhang, Shanshan, Vucetic, Slobodan, Wang, Zheng, Sternberg, Michael JE, Wass, Mark N, Huntley, Rachael P, Martin, Maria J, Robinson, Peter N, Moreau, Yves, Babbitt, Patricia C, Brenner, Steven E, Linial, Michal, Orengo, Christine A, Rost, Burkhard, Greene, Casey S, Mooney, Sean D, Friedberg, Iddo

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An expanded evaluation of protein function prediction methods shows an improvement in accuracy von Bankapur, Asma R, Kahanda, Indika, Verspoor, Karin M, Koo, Emily, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sayed ME Sahraeian, Martelli, Pier Luigi, Profiti, Giuseppe, Cheng, Jianlin, Altenhoff, Adrian, Skunca, Nives, Dessimoz, Christophe, Hakala, Kai, Mehryary, Farrokh, Salakoski, Tapio, Fang, Hai, Smithers, Ben, Oates, Matt, Gough, Julian, Holm, Liisa, Ching-Tai, Chen, Bryson, Kevin, Minneci, Federico, Chapman, Samuel, Khan, Ishita K, Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Cibrian-Uhalte, Elena, Denny, Paul, Hieta, Reija, Magrane, Michele, Melidoni, Anna N, Mutowo-Meullenet, Prudence, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, ElShal, Sarah, Léon-Charles Tranchevent, Lees, Jonathan G, Sillitoe, Ian, Bhat, Prajwal, Nepusz, Tamás, Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Gillis, Jesse, Pavlidis, Paul, Goldberg, Tatyana, Richter, Lothar, Salamov, Asaf, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Wei, Ning, Zhou, Yuanpeng, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Toppo, Stefano, Giollo, Manuel, Piovesan, Damiano, Angela del Pozo, Fernández, José M, Valencia, Alfonso, Tress, Michael L, Benso, Alfredo, Stefano Di Carlo, Savino, Alessandro, Re, Matteo, Mesiti, Marco, Valentini, Giorgio, Bargsten, Joachim W, Gemovic, Branislava, Glisic, Sanja, Perovic, Vladmir, Veljkovic, Veljko, Veljkovic, Nevena, Vencio, Ricardo ZN, Sharan, Malvika, Kansakar, Lakesh, Vucetic, Slobodan, Sternberg, Michael JE, Wass, Mark N, Huntley, Rachael P, Martin, Maria J, O'Donovan, Claire, Robinson, Peter N, Babbitt, Patricia C, Brenner, Steven E, Linial, Michal, Rost, Burkhard, Greene, Casey S, Friedberg, Iddo, Radivojac, Predrag

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An expanded evaluation of protein function prediction methods shows an improvement in accuracy von Jiang, Yuxiang, Clark, Wyatt T, Bankapur, Asma R, D'Andrea, Daniel, Kahanda, Indika, Verspoor, Karin M, Ben-Hur, Asa, Koo, Da Chen Emily, Penfold-Brown, Duncan, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sahraeian, Sayed M.E, Casadio, Rita, Cao, Renzhi, Altenhoff, Adrian, Dogan, Tunca, Hakala, Kai, Mehryary, Farrokh, Salakoski, Tapio, Oates, Matt, Gough, Julian, Koskinen, Patrik, Chen, Ching-Tai, Hsu, Wen-Lian, Cozzetto, Domenico, Minneci, Federico, Jones, David T, Chapman, Samuel, Bkc, Dukka, Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Cibrian-Uhalte, Elena, Denny, Paul, Foulger, Rebecca E, Legge, Duncan, Melidoni, Anna N, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, Tranchevent, Léon-Charles, Das, Sayoni, Dawson, Natalie L, Lee, David, Lees, Jonathan G, Sillitoe, Ian, Romero, Alfonso E, Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Goldberg, Tatyana, Hamp, Tobias, Richter, Lothar, Salamov, Asaf, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Falda, Marco, Fontana, Paolo, Ferrari, Carlo, Giollo, Manuel, Tosatto, Silvio C.E, del Pozo, Angela, Fernández, José M, Tress, Michael L, Di Carlo, Stefano, Politano, Gianfranco, Savino, Alessandro, Rehman, Hafeez Ur, Valentini, Giorgio, Bargsten, Joachim W, Gemovic, Branislava, Glisic, Sanja, Perovic, Vladmir, Veljkovic, Veljko, Veljkovic, Nevena, Almeida-e-Silva, Danillo C, Vencio, Ricardo ZN, Sharan, Malvika, Vogel, Jörg, Zhang, Shanshan, Vucetic, Slobodan, Wang, Zheng, Sternberg, Michael J.E, Wass, Mark N, Huntley, Rachael P, Martin, Maria J, Robinson, Peter N, Moreau, Yves, Babbitt, Patricia C, Brenner, Steven E, Linial, Michal, Orengo, Christine A, Rost, Burkhard, Greene, Casey S, Mooney, Sean D, Friedberg, Iddo

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