Genetic and transcriptional evolution alters cancer cell line drug response von Ben-David, Uri, Siranosian, Benjamin, Ha, Gavin, Tang, Helen, Oren, Yaara, Hinohara, Kunihiko, Strathdee, Craig A., Dempster, Joshua, Lyons, Nicholas J., Burns, Robert, Nag, Anwesha, Kugener, Guillaume, Cimini, Beth, Tsvetkov, Peter, Maruvka, Yosef E., O’Rourke, Ryan, Garrity, Anthony, Tubelli, Andrew A., Bandopadhayay, Pratiti, Tsherniak, Aviad, Vazquez, Francisca, Wong, Bang, Birger, Chet, Ghandi, Mahmoud, Thorner, Aaron R., Bittker, Joshua A., Meyerson, Matthew, Getz, Gad, Beroukhim, Rameen, Golub, Todd R.

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SvABA: genome-wide detection of structural variants and indels by local assembly von Wala, Jeremiah A, Bandopadhayay, Pratiti, Greenwald, Noah F, O'Rourke, Ryan, Sharpe, Ted, Stewart, Chip, Schumacher, Steve, Li, Yilong, Weischenfeldt, Joachim, Yao, Xiaotong, Nusbaum, Chad, Campbell, Peter, Getz, Gad, Meyerson, Matthew, Zhang, Cheng-Zhong, Imielinski, Marcin, Beroukhim, Rameen

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Pediatric low-grade glioma: Targeted therapeutics and clinical trials in the molecular era von Manoharan, Neevika, Liu, Kevin X., Mueller, Sabine, Haas-Kogan, Daphne A., Bandopadhayay, Pratiti

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Pediatric neuro-oncology: Highlights of the last quarter-century von Power, Phoebe, Straehla, Joelle P, Fangusaro, Jason, Bandopadhayay, Pratiti, Manoharan, Neevika

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Epigenetic targeting of Hedgehog pathway transcriptional output through BET bromodomain inhibition von Tang, Yujie, Gholamin, Sharareh, Schubert, Simone, Willardson, Minde I, Lee, Alex, Bandopadhayay, Pratiti, Bergthold, Guillame, Masoud, Sabran, Nguyen, Brian, Vue, Nujsaubnusi, Balansay, Brianna, Yu, Furong, Oh, Sekyung, Woo, Pamelyn, Chen, Spenser, Ponnuswami, Anitha, Monje, Michelle, Atwood, Scott X, Whitson, Ramon J, Mitra, Siddhartha, Cheshier, Samuel H, Qi, Jun, Beroukhim, Rameen, Tang, Jean Y, Wechsler-Reya, Rob, Oro, Anthony E, Link, Brian A, Bradner, James E, Cho, Yoon-Jae

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Clinical and treatment factors determining long‐term outcomes for adult survivors of childhood low‐grade glioma: A population‐based study von Krishnatry, Rahul, Zhukova, Nataliya, Guerreiro Stucklin, Ana S., Pole, Jason D., Mistry, Matthew, Fried, Iris, Ramaswamy, Vijay, Bartels, Ute, Huang, Annie, Laperriere, Normand, Dirks, Peter, Nathan, Paul C., Greenberg, Mark, Malkin, David, Hawkins, Cynthia, Bandopadhayay, Pratiti, Kieran, Mark W., Manley, Peter E., Bouffet, Eric, Tabori, Uri

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An in-tumor genetic screen reveals that the BET bromodomain protein, BRD4, is a potential therapeutic target in ovarian carcinoma von Baratta, Maria Giuseppina, Schinzel, Anna C., Zwang, Yaara, Bandopadhayay, Pratiti, Bowman-Colin, Christian, Kutt, Jennifer, Curtis, Jennifer, Piao, Huiying, Wong, Laura C., Kung, Andrew L., Beroukhim, Rameen, Bradner, James E., Drapkin, Ronny, Hahn, William C., Liu, Joyce F., Livingston, David M.

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Dual HDAC and PI3K Inhibition Abrogates NFκB- and FOXM1-Mediated DNA Damage Response to Radiosensitize Pediatric High-Grade Gliomas von Pal, Sharmistha, Kozono, David, Yang, Xiaodong, Fendler, Wojciech, Fitts, Whitney, Ni, Jing, Alberta, John A, Zhao, Jean, Liu, Kevin X, Bian, Jie, Truffaux, Nathalene, Weiss, William A, Resnick, Adam C, Bandopadhayay, Pratiti, Ligon, Keith L, DuBois, Steven G, Mueller, Sabine, Chowdhury, Dipanjan, Haas-Kogan, Daphne A

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Single cell spatial analysis reveals the topology of immunomodulatory purinergic signaling in glioblastoma von Coy, Shannon, Wang, Shu, Stopka, Sylwia A., Lin, Jia-Ren, Yapp, Clarence, Ritch, Cecily C., Salhi, Lisa, Baker, Gregory J., Rashid, Rumana, Baquer, Gerard, Regan, Michael, Khadka, Prasidda, Cole, Kristina A., Hwang, Jaeho, Wen, Patrick Y., Bandopadhayay, Pratiti, Santi, Mariarita, De Raedt, Thomas, Ligon, Keith L., Agar, Nathalie Y. R., Sorger, Peter K., Touat, Mehdi, Santagata, Sandro

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Rethinking childhood ependymoma: a retrospective, multi-center analysis reveals poor long-term overall survival von Marinoff, Amanda E., Ma, Clement, Guo, Dongjing, Snuderl, Matija, Wright, Karen D., Manley, Peter E., Al-Sayegh, Hasan, Sinai, Claire E., Ullrich, Nicole J., Marcus, Karen, Haas-Kogan, Daphne, Goumnerova, Liliana, London, Wendy B., Kieran, Mark W., Chi, Susan N., Fangusaro, Jason, Bandopadhayay, Pratiti

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Mitogenic and progenitor gene programmes in single pilocytic astrocytoma cells von Reitman, Zachary J., Paolella, Brenton R., Bergthold, Guillaume, Pelton, Kristine, Becker, Sarah, Jones, Robert, Sinai, Claire E., Malkin, Hayley, Huang, Ying, Grimmet, Leslie, Herbert, Zachary T., Sun, Yu, Weatherbee, Jessica L., Alberta, John A., Daley, John F., Rozenblatt-Rosen, Orit, Condurat, Alexandra L., Qian, Kenin, Khadka, Prasidda, Segal, Rosalind A., Haas-Kogan, Daphne, Filbin, Mariella G., Suva, Mario L., Regev, Aviv, Stiles, Charles D., Kieran, Mark W., Goumnerova, Liliana, Ligon, Keith L., Shalek, Alex K., Bandopadhayay, Pratiti, Beroukhim, Rameen

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Copy-number and gene dependency analysis reveals partial copy loss of wild-type SF3B1 as a novel cancer vulnerability von Paolella, Brenton R, Gibson, William J, Urbanski, Laura M, Alberta, John A, Zack, Travis I, Bandopadhayay, Pratiti, Nichols, Caitlin A, Agarwalla, Pankaj K, Brown, Meredith S, Lamothe, Rebecca, Yu, Yong, Choi, Peter S, Obeng, Esther A, Heckl, Dirk, Wei, Guo, Wang, Belinda, Tsherniak, Aviad, Vazquez, Francisca, Weir, Barbara A, Root, David E, Cowley, Glenn S, Buhrlage, Sara J, Stiles, Charles D, Ebert, Benjamin L, Hahn, William C, Reed, Robin, Beroukhim, Rameen

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Diffuse intrinsic pontine glioma: Insights into oncogenesis and opportunities for targeted therapy von Groves, Andrew, Bandopadhayay, Pratiti, Cooney, Tabitha M.

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A compendium of Amplification-Related Gain Of Sensitivity genes in human cancer von Rendo, Veronica, Schubert, Michael, Khuu, Nicholas, Suarez Peredo Rodriguez, Maria F., Whyte, Declan, Ling, Xiao, van den Brink, Anouk, Huang, Kaimeng, Swift, Michelle, He, Yizhou, Zerbib, Johanna, Smith, Ross, Raaijmakers, Jonne, Bandopadhayay, Pratiti, Guenther, Lillian M., Hwang, Justin H., Iniguez, Amanda, Moody, Susan, Seo, Ji-Heui, Stover, Elizabeth H., Garraway, Levi, Hahn, William C., Stegmaier, Kimberly, Medema, René H., Chowdhury, Dipanjan, Colomé-Tatché, Maria, Ben-David, Uri, Beroukhim, Rameen, Foijer, Floris

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Author Correction: Molecular profiling of 888 pediatric tumors informs future precision trials and data-sharing initiatives in pediatric cancer von Forrest, Suzanne J., Gupta, Hersh, Ward, Abigail, Li, Yvonne Y., Doan, Duong, Al-Ibraheemi, Alyaa, Alexandrescu, Sanda, Bandopadhayay, Pratiti, Shusterman, Suzanne, Mullen, Elizabeth A., Collins, Natalie B., Chi, Susan N., Wright, Karen D., Kumari, Priti, Mazor, Tali, Ligon, Keith L., Shivdasani, Priyanka, Manam, Monica, MacConaill, Laura E., Ceca, Evelina, Benich, Sidney N., London, Wendy B., Schilsky, Richard L., Bruinooge, Suanna S., Guidry Auvil, Jaime M., Cerami, Ethan, Rollins, Barrett J., Meyerson, Matthew L., Lindeman, Neal I., Johnson, Bruce E., Cherniack, Andrew D., Church, Alanna J., Janeway, Katherine A.

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Molecular profiling of 888 pediatric tumors informs future precision trials and data-sharing initiatives in pediatric cancer von Forrest, Suzanne J., Gupta, Hersh, Ward, Abigail, Li, Yvonne Y., Doan, Duong, Al-Ibraheemi, Alyaa, Alexandrescu, Sanda, Bandopadhayay, Pratiti, Shusterman, Suzanne, Mullen, Elizabeth A., Collins, Natalie B., Chi, Susan N., Wright, Karen D., Kumari, Priti, Mazor, Tali, Ligon, Keith L., Shivdasani, Priyanka, Manam, Monica, MacConaill, Laura E., Ceca, Evelina, Benich, Sidney N., London, Wendy B., Schilsky, Richard L., Bruinooge, Suanna S., Guidry Auvil, Jaime M., Cerami, Ethan, Rollins, Barrett J., Meyerson, Matthew L., Lindeman, Neal I., Johnson, Bruce E., Cherniack, Andrew D., Church, Alanna J., Janeway, Katherine A.

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CloneSifter: enrichment of rare clones from heterogeneous cell populations von Feldman, David, Tsai, FuNien, Garrity, Anthony J, O'Rourke, Ryan, Brenan, Lisa, Ho, Patricia, Gonzalez, Elizabeth, Konermann, Silvana, Johannessen, Cory M, Beroukhim, Rameen, Bandopadhayay, Pratiti, Blainey, Paul C

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“LOGGIC” of RNA-sequencing in enhancing diagnoses of pediatric low-grade gliomas von Apfelbaum, April, Bandopadhayay, Pratiti

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Genome-wide CRISPR-Cas9 knockout screens identify DNMT1 as a druggable dependency in sonic hedgehog medulloblastoma von Tsiami, Foteini, Lago, Chiara, Pozza, Noemi, Piccioni, Federica, Zhao, Xuesong, Lülsberg, Fabienne, Root, David E, Tiberi, Luca, Kool, Marcel, Schittenhelm, Jens, Bandopadhayay, Pratiti, Segal, Rosalind A, Tabatabai, Ghazaleh, Merk, Daniel J

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The “Risk” in Pediatric Low-Grade Glioma von Fangusaro, Jason, Bandopadhayay, Pratiti

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