Conserved role of intragenic DNA methylation in regulating alternative promoters von Maunakea, Alika K., Nagarajan, Raman P., Bilenky, Mikhail, Ballinger, Tracy J., D’Souza, Cletus, Fouse, Shaun D., Johnson, Brett E., Hong, Chibo, Nielsen, Cydney, Zhao, Yongjun, Turecki, Gustavo, Delaney, Allen, Varhol, Richard, Thiessen, Nina, Shchors, Ksenya, Heine, Vivi M., Rowitch, David H., Xing, Xiaoyun, Fiore, Chris, Schillebeeckx, Maximiliaan, Jones, Steven J. M., Haussler, David, Marra, Marco A., Hirst, Martin, Wang, Ting, Costello, Joseph F.

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Modeling double strand break susceptibility to interrogate structural variation in cancer von Ballinger, Tracy J, Bouwman, Britta A M, Mirzazadeh, Reza, Garnerone, Silvano, Crosetto, Nicola, Semple, Colin A

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Retrotransposition of gene transcripts leads to structural variation in mammalian genomes von Ewing, Adam D, Ballinger, Tracy J, Earl, Dent, Harris, Christopher C, Ding, Li, Wilson, Richard K, Haussler, David

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Abstract B1-11: Application of the CN-AVG method to reconstruct the evolutionary history of glioblastoma multiforme von Ballinger, Tracy J., Zerbino, Daniel, Paten, Benedict, Haussler, David

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Abstract A29: Searching for retrotransposon insertions from paired end sequencing of tumors von Ballinger, Tracy J., Ewing, Adam

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Conserved role of intragenic DNA methylation in regulating alternative promoters von Maunakea, Alika K, Nagarajan, Raman P, Bilenky, Mikhail, Ballinger, Tracy J, Souza, Cletus D, Fouse, Shaun D, Johnson, Brett E, Hong, Chibo, Nielsen, Cydney, Zhao, Yongjun, Turecki, Gustavo, Delaney, Allen, Varhol, Richard, Thiessen, Nina, Shchors, Ksenya, Heine, Vivi M, Rowitch, David H, Xing, Xiaoyun, Fiore, Chris, Schillebeeckx, Maximiliaan, Jones, Steven J.M, Haussler, David, Marra, Marco A, Hirst, Ma, Wang, Ting, Costello, Joseph F

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Conserved role of intragenic DNA methylation in regulating alternative promoters von Maunakea, Alika K, Nagarajan, Raman P, Bilenky, Mikhail, Ballinger, Tracy J, Souza, Cletus D, Fouse, Shaun D, Johnson, Brett E, Hong, Chibo, Nielsen, Cydney, Zhao, Yongjun, Turecki, Gustavo, Delaney, Allen, Varhol, Richard, Thiessen, Nina, Shchors, Ksenya, Heine, Vivi M, Rowitch, David H, Xing, Xiaoyun, Fiore, Chris, Schillebeeckx, Maximiliaan, Jones, Steven J.M, Haussler, David, Marra, Marco A, Hirst, Martin, Wang, Ting, Costello, Joseph F

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Heterochromatin delays CRISPR-Cas9 mutagenesis but does not influence the outcome of mutagenic DNA repair von Kallimasioti-Pazi, Eirini M, Thelakkad Chathoth, Keerthi, Taylor, Gillian C, Meynert, Alison, Ballinger, Tracy, Kelder, Martijn J E, Lalevée, Sébastien, Sanli, Ildem, Feil, Robert, Wood, Andrew J

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Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications von Harris, R Alan, Wang, Ting, Coarfa, Cristian, Nagarajan, Raman P, Hong, Chibo, Downey, Sara L, Johnson, Brett E, Fouse, Shaun D, Delaney, Allen, Zhao, Yongjun, Olshen, Adam, Ballinger, Tracy, Zhou, Xin, Forsberg, Kevin J, Gu, Junchen, Echipare, Lorigail, O'Geen, Henriette, Lister, Ryan, Pelizzola, Mattia, Xi, Yuanxin, Epstein, Charles B, Bernstein, Bradley E, Hawkins, R David, Ren, Bing, Chung, Wen-Yu, Gu, Hongcang, Bock, Christoph, Gnirke, Andreas, Zhang, Michael Q, Haussler, David, Ecker, Joseph R, Li, Wei, Farnham, Peggy J, Waterland, Robert A, Meissner, Alexander, Marra, Marco A, Hirst, Martin, Milosavljevic, Aleksandar, Costello, Joseph F

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Integrative analysis of 111 reference human epigenomes von Kundaje, Anshul, Meuleman, Wouter, Ernst, Jason, Bilenky, Misha, Yen, Angela, Heravi-Moussavi, Alireza, Kheradpour, Pouya, Zhang, Zhizhuo, Wang, Jianrong, Ziller, Michael J., Amin, Viren, Whitaker, John W., Schultz, Matthew D., Ward, Lucas D., Sarkar, Abhishek, Quon, Gerald, Sandstrom, Richard S., Eaton, Matthew L., Wu, Yi-Chieh, Pfenning, Andreas R., Wang, Xinchen, Claussnitzer, Melina, Liu, Yaping, Coarfa, Cristian, Harris, R. Alan, Shoresh, Noam, Epstein, Charles B., Gjoneska, Elizabeta, Leung, Danny, Xie, Wei, Hawkins, R. David, Lister, Ryan, Hong, Chibo, Gascard, Philippe, Mungall, Andrew J., Moore, Richard, Chuah, Eric, Tam, Angela, Canfield, Theresa K., Hansen, R. Scott, Kaul, Rajinder, Sabo, Peter J., Bansal, Mukul S., Carles, Annaick, Dixon, Jesse R., Farh, Kai-How, Feizi, Soheil, Karlic, Rosa, Kim, Ah-Ram, Kulkarni, Ashwinikumar, Li, Daofeng, Lowdon, Rebecca, Elliott, GiNell, Mercer, Tim R., Neph, Shane J., Onuchic, Vitor, Polak, Paz, Rajagopal, Nisha, Ray, Pradipta, Sallari, Richard C., Siebenthall, Kyle T., Sinnott-Armstrong, Nicholas A., Stevens, Michael, Thurman, Robert E., Wu, Jie, Zhang, Bo, Zhou, Xin, Beaudet, Arthur E., Boyer, Laurie A., De Jager, Philip L., Farnham, Peggy J., Fisher, Susan J., Haussler, David, Jones, Steven J. M., Li, Wei, Marra, Marco A., McManus, Michael T., Sunyaev, Shamil, Thomson, James A., Tlsty, Thea D., Tsai, Li-Huei, Wang, Wei, Waterland, Robert A., Zhang, Michael Q., Chadwick, Lisa H., Bernstein, Bradley E., Costello, Joseph F., Ecker, Joseph R., Hirst, Martin, Meissner, Alexander, Milosavljevic, Aleksandar, Ren, Bing, Stamatoyannopoulos, John A., Wang, Ting, Kellis, Manolis

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A Survey of Patient Experience in CML: American and Canadian Perspectives von Hillis, Christopher, Flynn, Kathryn E, Goldman, Erinn Hoag, Moreira-Lucas, Tracy S, Visentini, Josie, Dorman, Stephanie, Ballinger, Rachel, Byrnes, Hilary F, De Palma, Andrea, Barbier, Valentin, Machado, Lisa, Atallah, Ehab

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Killer cell immunoglobulin-like receptors are associated with common variable immune deficiency pathogenesis von Wang, Yuge, MS, Hwangpo, Tracy, MD, PhD, Martin, Maureen P., MD, Vince, Nicolas, PhD, Qi, Ying, PhD, Reynolds, Richard J., PhD, Absher, Devin, PhD, Gao, Xiaojiang, PhD, Ballinger, Carol A., PhD, Burrows, Peter D., PhD, Atkinson, T. Prescott, MD, PhD, Brown, Elizabeth E., PhD, Elgavish, Ada, PhD, Liu, Cunren, PhD, Carrington, Mary, PhD, Schroeder, Harry W., MD, PhD

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Comparison of squencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications von HARRIS, R. Alan, TING WANG, OLSHEN, Adam, BALLINGER, Tracy, XIN ZHOU, FORSBERG, Kevin J, JUNCHEN GU, ECHIPARE, Lorigail, O'GEEN, Henriette, LISTER, Ryan, PELIZZOLA, Mattia, YUANXIN XI, COARFA, Cristian, EPSTEIN, Charles B, BERNSTEIN, Bradley E, HAWKINS, R. David, BING REN, CHUNG, Wen-Yu, HONGCANG GU, BOCK, Christoph, GNIRKE, Andreas, ZHANG, Michael Q, HAUSSLER, David, NAGARAJAN, Raman P, ECKER, Joseph R, WEI LI, FARNHAM, Peggy J, WATERLAND, Robert A, MEISSNER, Alexander, MARRA, Marco A, HIRST, Martin, MILOSAVLJEVIC, Aleksandar, COSTELLO, Joseph F, HONG, Chibo, DOWNEY, Sara L, JOHNSON, Brett E, FOUSE, Shaun D, DELANEY, Allen, YONGJUN ZHAO

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Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications von Harris, R Alan, Wang, Ting, Coarfa, Cristian, Nagarajan, Raman P, Hong, Chibo, Downey, Sara L, Johnson, Brett E, Fouse, Shaun D, Delaney, Allen, Zhao, Yongjun, Olshen, Adam, Ballinger, Tracy, Zhou, Xin, Forsberg, Kevin J, Gu, Junchen, Echipare, Lorigail, O, Henriette, Lister, Ryan, Pelizzola, Mattia, Xi, Yuanxin, Epstein, Charles B, Bernstein, Bradley E, Hawkins, R David, Ren, Bing, Chung, Wen-Yu, Gu, Hongcang, Bock, Christoph, Gnirke, Andreas, Zhang, Michael Q, Haussler, David, Ecker, Joseph R, Li, Wei, Farnham, Peggy J, Waterland, Robert A, Meissner, Alexander, Marra, Marco A, Hirst, Martin, Milosavljevic, Aleksandar, Costello, Joseph F

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Heterochromatin delays CRISPR-Cas9 mutagenesis but does not influence the outcome of mutagenic DNA repair von Kallimasioti-Pazi, Eirini M, Thelakkad Chathoth, Keerthi, Taylor, Gillian C, Meynert, Alison, Ballinger, Tracy, Kelder, Ma, Lalevée, Sébastien, Sanli, Ildem, Feil, Robert, Wood, Andrew J

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