Mycorrhizal Infection Can Ameliorate Abiotic Factors in Urban Soils von Balacco, Jennifer R., Vaidya, Bhagyashree P., Hagmann, Diane F., Goodey, Nina M., Krumins, Jennifer Adams

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Low mutation rate in epaulette sharks is consistent with a slow rate of evolution in sharks von Sendell-Price, Ashley T., Tulenko, Frank J., Pettersson, Mats, Kang, Du, Montandon, Margo, Winkler, Sylke, Kulb, Kathleen, Naylor, Gavin P., Phillippy, Adam, Fedrigo, Olivier, Mountcastle, Jacquelyn, Balacco, Jennifer R., Dutra, Amalia, Dale, Rebecca E., Haase, Bettina, Jarvis, Erich D., Myers, Gene, Burgess, Shawn M., Currie, Peter D., Andersson, Leif, Schartl, Manfred

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Reference genome and demographic history of the most endangered marine mammal, the vaquita von Morin, Phillip A., Archer, Frederick I., Avila, Catherine D., Balacco, Jennifer R., Bukhman, Yury V., Chow, William, Fedrigo, Olivier, Formenti, Giulio, Fronczek, Julie A., Fungtammasan, Arkarachai, Gulland, Frances M. D., Haase, Bettina, Peter Heide‐Jorgensen, Mads, Houck, Marlys L., Howe, Kerstin, Misuraca, Ann C., Mountcastle, Jacquelyn, Musser, Whitney, Paez, Sadye, Pelan, Sarah, Phillippy, Adam, Rhie, Arang, Robinson, Jacqueline, Rojas‐Bracho, Lorenzo, Rowles, Teri K., Ryder, Oliver A., Smith, Cynthia R., Stevenson, Sacha, Taylor, Barbara L., Teilmann, Jonas, Torrance, James, Wells, Randall S., Westgate, Andrew J., Jarvis, Erich D.

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A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants von Rice, Edward S, Alberdi, Antton, Alfieri, James, Athrey, Giridhar, Balacco, Jennifer R, Bardou, Philippe, Blackmon, Heath, Charles, Mathieu, Cheng, Hans H, Fedrigo, Olivier, Fiddaman, Steven R, Formenti, Giulio, Frantz, Laurent A F, Gilbert, M Thomas P, Hearn, Cari J, Jarvis, Erich D, Klopp, Christophe, Marcos, Sofia, Mason, Andrew S, Velez-Irizarry, Deborah, Xu, Luohao, Warren, Wesley C

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Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy von Larivière, Delphine, Abueg, Linelle, Brajuka, Nadolina, Gallardo-Alba, Cristóbal, Grüning, Bjorn, Ko, Byung June, Ostrovsky, Alex, Palmada-Flores, Marc, Pickett, Brandon D., Rabbani, Keon, Antunes, Agostinho, Balacco, Jennifer R., Chaisson, Mark J. P., Cheng, Haoyu, Collins, Joanna, Couture, Melanie, Denisova, Alexandra, Fedrigo, Olivier, Gallo, Guido Roberto, Giani, Alice Maria, Gooder, Grenville MacDonald, Horan, Kathleen, Jain, Nivesh, Johnson, Cassidy, Kim, Heebal, Lee, Chul, Marques-Bonet, Tomas, O’Toole, Brian, Rhie, Arang, Secomandi, Simona, Sozzoni, Marcella, Tilley, Tatiana, Uliano-Silva, Marcela, van den Beek, Marius, Williams, Robert W., Waterhouse, Robert M., Phillippy, Adam M., Jarvis, Erich D., Schatz, Michael C., Nekrutenko, Anton, Formenti, Giulio

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Prioritizing Endangered Species in Genome Sequencing: Conservation Genomics in Action with the First Platinum-Standard Reference-Quality Genome of the Critically Endangered Europea... von Skorupski, Jakub, Brandes, Florian, Seebass, Christian, Festl, Wolfgang, Śmietana, Przemysław, Balacco, Jennifer, Jain, Nivesh, Tilley, Tatiana, Abueg, Linelle, Wood, Jonathan, Sims, Ying, Formenti, Giulio, Fedrigo, Olivier, Jarvis, Erich D.

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A genomic basis of vocal rhythm in birds von Sebastianelli, Matteo, Lukhele, Sifiso M., Secomandi, Simona, de Souza, Stacey G., Haase, Bettina, Moysi, Michaella, Nikiforou, Christos, Hutfluss, Alexander, Mountcastle, Jacquelyn, Balacco, Jennifer, Pelan, Sarah, Chow, William, Fedrigo, Olivier, Downs, Colleen T., Monadjem, Ara, Dingemanse, Niels J., Jarvis, Erich D., Brelsford, Alan, vonHoldt, Bridgett M., Kirschel, Alexander N. G.

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A chromosome-level reference genome and pangenome for barn swallow population genomics von Secomandi, Simona, Gallo, Guido R., Sozzoni, Marcella, Iannucci, Alessio, Galati, Elena, Abueg, Linelle, Balacco, Jennifer, Caprioli, Manuela, Chow, William, Ciofi, Claudio, Collins, Joanna, Fedrigo, Olivier, Ferretti, Luca, Fungtammasan, Arkarachai, Haase, Bettina, Howe, Kerstin, Kwak, Woori, Lombardo, Gianluca, Masterson, Patrick, Messina, Graziella, Møller, Anders P., Mountcastle, Jacquelyn, Mousseau, Timothy A., Ferrer Obiol, Joan, Olivieri, Anna, Rhie, Arang, Rubolini, Diego, Saclier, Marielle, Stanyon, Roscoe, Stucki, David, Thibaud-Nissen, Françoise, Torrance, James, Torroni, Antonio, Weber, Kristina, Ambrosini, Roberto, Bonisoli-Alquati, Andrea, Jarvis, Erich D., Gianfranceschi, Luca, Formenti, Giulio

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A Chromosome-Level Reference Genome for the Black-Legged Kittiwake (Rissa tridactyla), a Declining Circumpolar Seabird von Sozzoni, Marcella, Ferrer Obiol, Joan, Formenti, Giulio, Tigano, Anna, Paris, Josephine R, Balacco, Jennifer R, Jain, Nivesh, Tilley, Tatiana, Collins, Joanna, Sims, Ying, Wood, Jonathan, Benowitz-Fredericks, Z Morgan, Field, Kenneth A, Seyoum, Eyuel, Gatt, Marie Claire, Léandri-Breton, Don-Jean, Nakajima, Chinatsu, Whelan, Shannon, Gianfranceschi, Luca, Hatch, Scott A, Elliott, Kyle H, Shoji, Akiko, Cecere, Jacopo G, Jarvis, Erich D, Pilastro, Andrea, Rubolini, Diego

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Chromosome-level genome assembly of chub mackerel (Scomber japonicus) from the Indo-Pacific Ocean von Lee, Young Ho, Abueg, Linelle, Kim, Jin-Koo, Kim, Young Wook, Fedrigo, Olivier, Balacco, Jennifer, Formenti, Giulio, Howe, Kerstin, Tracey, Alan, Wood, Jonathan, Thibaud-Nissen, Françoise, Nam, Bo Hye, No, Eun Soo, Kim, Hye Ran, Lee, Chul, Jarvis, Erich D., Kim, Heebal

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An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes von Timoshevskaya, Nataliya, Eşkut, Kaan İ., Timoshevskiy, Vladimir A., Robb, Sofia M.C., Holt, Carson, Hess, Jon E., Parker, Hugo J., Baker, Cindy F., Miller, Allison K., Saraceno, Cody, Yandell, Mark, Krumlauf, Robb, Narum, Shawn R., Lampman, Ralph T., Gemmell, Neil J., Mountcastle, Jacquelyn, Haase, Bettina, Balacco, Jennifer R., Formenti, Giulio, Pelan, Sarah, Sims, Ying, Howe, Kerstin, Fedrigo, Olivier, Jarvis, Erich D., Smith, Jeramiah J.

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Chromosome level genome assembly of the Etruscan shrew Suncus etruscus von Bukhman, Yury V., Meyer, Susanne, Chu, Li-Fang, Abueg, Linelle, Antosiewicz-Bourget, Jessica, Balacco, Jennifer, Brecht, Michael, Dinatale, Erica, Fedrigo, Olivier, Formenti, Giulio, Fungtammasan, Arkarachai, Giri, Swagarika Jaharlal, Hiller, Michael, Howe, Kerstin, Kihara, Daisuke, Mamott, Daniel, Mountcastle, Jacquelyn, Pelan, Sarah, Rabbani, Keon, Sims, Ying, Tracey, Alan, Wood, Jonathan M. D., Jarvis, Erich D., Thomson, James A., Chaisson, Mark J. P., Stewart, Ron

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Plants mitigate restrictions to phosphatase activity in metal contaminated soils von Vaidya, Bhagyashree P., Hagmann, Diane F., Balacco, Jennifer, Passchier, Sandra, Krumins, Jennifer Adams, Goodey, Nina M.

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Complete vertebrate mitogenomes reveal widespread repeats and gene duplications von Formenti, Giulio, Rhie, Arang, Balacco, Jennifer, Haase, Bettina, Mountcastle, Jacquelyn, Fedrigo, Olivier, Brown, Samara, Capodiferro, Marco Rosario, Al-Ajli, Farooq O., Ambrosini, Roberto, Houde, Peter, Koren, Sergey, Oliver, Karen, Smith, Michelle, Skelton, Jason, Betteridge, Emma, Dolucan, Jale, Corton, Craig, Bista, Iliana, Torrance, James, Tracey, Alan, Wood, Jonathan, Uliano-Silva, Marcela, Howe, Kerstin, McCarthy, Shane, Winkler, Sylke, Kwak, Woori, Korlach, Jonas, Fungtammasan, Arkarachai, Fordham, Daniel, Costa, Vania, Mayes, Simon, Chiara, Matteo, Horner, David S., Myers, Eugene, Durbin, Richard, Achilli, Alessandro, Braun, Edward L., Phillippy, Adam M., Jarvis, Erich D.

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Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue von Hardwick, Simon A., Hu, Wen, Joglekar, Anoushka, Fan, Li, Collier, Paul G., Foord, Careen, Balacco, Jennifer, Lanjewar, Samantha, Sampson, Maureen McGuirk, Koopmans, Frank, Prjibelski, Andrey D., Mikheenko, Alla, Belchikov, Natan, Jarroux, Julien, Lucas, Anne Bergstrom, Palkovits, Miklós, Luo, Wenjie, Milner, Teresa A., Ndhlovu, Lishomwa C., Smit, August B., Trojanowski, John Q., Lee, Virginia M. Y., Fedrigo, Olivier, Sloan, Steven A., Tombácz, Dóra, Ross, M. Elizabeth, Jarvis, Erich, Boldogkői, Zsolt, Gan, Li, Tilgner, Hagen U.

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Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain von Joglekar, Anoushka, Hu, Wen, Zhang, Bei, Narykov, Oleksandr, Diekhans, Mark, Marrocco, Jordan, Balacco, Jennifer, Ndhlovu, Lishomwa C., Milner, Teresa A., Fedrigo, Olivier, Jarvis, Erich D., Sheynkman, Gloria, Korkin, Dmitry, Ross, M. Elizabeth, Tilgner, Hagen U.

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Evolutionary and biomedical insights from a marmoset diploid genome assembly von Yang, Chentao, Zhou, Yang, Marcus, Stephanie, Formenti, Giulio, Bergeron, Lucie A., Song, Zhenzhen, Bi, Xupeng, Bergman, Juraj, Rousselle, Marjolaine Marie C., Zhou, Chengran, Zhou, Long, Deng, Yuan, Fang, Miaoquan, Xie, Duo, Zhu, Yuanzhen, Tan, Shangjin, Mountcastle, Jacquelyn, Haase, Bettina, Balacco, Jennifer, Wood, Jonathan, Chow, William, Rhie, Arang, Pippel, Martin, Fabiszak, Margaret M., Koren, Sergey, Fedrigo, Olivier, Freiwald, Winrich A., Howe, Kerstin, Yang, Huanming, Phillippy, Adam M., Schierup, Mikkel Heide, Jarvis, Erich D., Zhang, Guojie

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Ecological diversification of sea catfishes is accompanied by genome-wide signatures of positive selection von Rincon-Sandoval, Melissa, De-Kayne, Rishi, Shank, Stephen D., Pirro, Stacy, Ko’ou, Alfred, Abueg, Linelle, Tracey, Alan, Mountcastle, Jackie, O’Toole, Brian, Balacco, Jennifer, Formenti, Giulio, Jarvis, Erich D., Arcila, Dahiana, Kosakovsky Pond, Sergei L., Davis, Aaron, Bloom, Devin D., Betancur-R, Ricardo

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Prioritizing Endangered Species in Genome Sequencing: Conservation Genomics in Action with the First Platinum-Standard Reference-Quality Genome of the Critically Endangered Europea... von Skorupski, Jakub, Brandes, Florian, Seebass, Christian, Festl, Wolfgang, Śmietana, Przemysław, Balacco, Jennifer, Jain, Nivesh, Tilley, Tatiana, Abueg, Linelle, Wood, Jonathan, Sims, Ying, Formenti, Giulio, Fedrigo, Olivier, Jarvis, Erich D

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A high-quality reference genome for the critically endangered Aeolian wall lizard, Podarcis raffonei von Gabrielli, Maëva, Benazzo, Andrea, Biello, Roberto, Ancona, Lorena, Fuselli, Silvia, Iannucci, Alessio, Balacco, Jennifer, Mountcastle, Jacqueline, Tracey, Alan, Ficetola, Gentile Francesco, Salvi, Daniele, Sollitto, Marco, Fedrigo, Olivier, Formenti, Giulio, Jarvis, Erich D, Gerdol, Marco, Ciofi, Claudio, Trucchi, Emiliano, Bertorelle, Giorgio

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