Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy von Kendig, Katherine I, Baheti, Saurabh, Bockol, Matthew A, Drucker, Travis M, Hart, Steven N, Heldenbrand, Jacob R, Hernaez, Mikel, Hudson, Matthew E, Kalmbach, Michael T, Klee, Eric W, Mattson, Nathan R, Ross, Christian A, Taschuk, Morgan, Wieben, Eric D, Wiepert, Mathieu, Wildman, Derek E, Mainzer, Liudmila S

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New DNA Methylation Markers for Pancreatic Cancer: Discovery, Tissue Validation, and Pilot Testing in Pancreatic Juice von Kisiel, John B, Raimondo, Massimo, Taylor, William R, Yab, Tracy C, Mahoney, Douglas W, Sun, Zhifu, Middha, Sumit, Baheti, Saurabh, Zou, Hongzhi, Smyrk, Thomas C, Boardman, Lisa A, Petersen, Gloria M, Ahlquist, David A

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Recommendations for performance optimizations when using GATK3.8 and GATK4 von Heldenbrand, Jacob R, Baheti, Saurabh, Bockol, Matthew A, Drucker, Travis M, Hart, Steven N, Hudson, Matthew E, Iyer, Ravishankar K, Kalmbach, Michael T, Kendig, Katherine I, Klee, Eric W, Mattson, Nathan R, Wieben, Eric D, Wiepert, Mathieu, Wildman, Derek E, Mainzer, Liudmila S

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The Role of the Histone Methyltransferase Enhancer of Zeste Homolog 2 (EZH2) in the Pathobiological Mechanisms Underlying Inflammatory Bowel Disease (IBD) von Sarmento, Olga F., Svingen, Phyllis A., Xiong, Yuning, Sun, Zhifu, Bamidele, Adebowale O., Mathison, Angela J., Smyrk, Thomas C., Nair, Asha A., Gonzalez, Michelle M., Sagstetter, Mary R., Baheti, Saurabh, McGovern, Dermot P.B., Friton, Jessica J., Papadakis, Konstantinos A., Gautam, Goel, Xavier, Ramnik J., Urrutia, Raul A., Faubion, William A.

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Recurrent Genomic Alterations in Soft Tissue Perineuriomas von Carter, Jodi M, Wu, Yanhong, Blessing, Melissa M, Folpe, Andrew L, Thorland, Erik C, Spinner, Robert J, Jentoft, Mark E, Wang, Chen, Baheti, Saurabh, Niu, Zhiyv, Mauermann, Michelle L, Klein, Christopher J

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Whole Exome Sequencing Among 26 Patients With Indeterminate Acute Liver Failure: Response to Letter to the Editor von Rakela, Jorge, Dehankar, Mrunal K., Baheti, Saurabh

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Association of intraneural perineurioma with neurofibromatosis type 2 von Pendleton, Courtney, Spinner, Robert J., Dyck, P. James B., Mauermann, Michelle L., Ladak, Adil, Restrepo, Carlos E., Baheti, Saurabh, Klein, Christopher J.

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HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data von Baheti, Saurabh, Tang, Xiaojia, O'Brien, Daniel R, Chia, Nicholas, Roberts, Lewis R, Nelson, Heidi, Boughey, Judy C, Wang, Liewei, Goetz, Matthew P, Kocher, Jean-Pierre A, Kalari, Krishna R

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DNA methylation profiling: comparison of genome-wide sequencing methods and the Infinium Human Methylation 450 Bead Chip von Walker, Denise L, Bhagwate, Aditya Vijay, Baheti, Saurabh, Smalley, Regenia L, Hilker, Christopher A, Sun, Zhifu, Cunningham, Julie M

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Aberrant signature methylome by DNMT1 hot spot mutation in hereditary sensory and autonomic neuropathy 1E von Sun, Zhifu, Wu, Yanhong, Ordog, Tamas, Baheti, Saurabh, Nie, Jinfu, Duan, Xiaohui, Hojo, Kaori, Kocher, Jean-Pierre, Dyck, Peter J, Klein, Christopher J

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Next-Generation Sequencing of CYP2C19 in Stent Thrombosis: Implications for Clopidogrel Pharmacogenomics von Morales-Rosado, Joel A., Goel, Kashish, Zhang, Lingxin, Åkerblom, Axel, Baheti, Saurabh, Black, John L., Eriksson, Niclas, Wallentin, Lars, James, Stefan, Storey, Robert F., Goodman, Shaun G., Jenkins, Gregory D., Eckloff, Bruce W., Bielinski, Suzette J., Sicotte, Hugues, Johnson, Stephen, Roger, Veronique L., Wang, Liewei, Weinshilboum, Richard, Klee, Eric W., Rihal, Charanjit S., Pereira, Naveen L.

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DNA methylation patterns in human iPSC-derived sensory neuronal differentiation von Ankam, Soneela, Rovini, Amandine, Baheti, Saurabh, Hrstka, Ron, Wu, Yanhong, Schmidt, Kiley, Wang, Hailong, Madigan, Nicolas, Koenig, Lena-Sophie, Stelzig, Kimberly, Resch, Zachary, Klein, Christopher J., Sun, Zhifu, Staff, Nathan P.

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An expanded variant list and assembly annotation identifies multiple novel coding and noncoding genes for prostate cancer risk using a normal prostate tissue eQTL data set von DeRycke, Melissa S, Larson, Melissa C, Nair, Asha A, McDonnell, Shannon K, French, Amy J, Tillmans, Lori S, Riska, Shaun M, Baheti, Saurabh, Fogarty, Zachary C, Larson, Nicholas B, O'Brien, Daniel R, Cheville, John C, Wang, Liang, Schaid, Daniel J, Thibodeau, Stephen N

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SoftSearch: integration of multiple sequence features to identify breakpoints of structural variations von Hart, Steven N, Sarangi, Vivekananda, Moore, Raymond, Baheti, Saurabh, Bhavsar, Jaysheel D, Couch, Fergus J, Kocher, Jean-Pierre A

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Correction to: Recommendations for performance optimizations when using GATK3.8 and GATK4 von Heldenbrand, Jacob R, Baheti, Saurabh, Bockol, Matthew A, Drucker, Travis M, Hart, Steven N, Hudson, Matthew E, Iyer, Ravishankar K, Kalmbach, Michael T, Kendig, Katherine I, Klee, Eric W, Mattson, Nathan R, Wieben, Eric D, Wiepert, Mathieu, Wildman, Derek E, Mainzer, Liudmila S

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Perinatal Nutritional Reprogramming of the Epigenome Promotes Subsequent Development of Nonalcoholic Steatohepatitis von Gutierrez Sanchez, Luz Helena, Tomita, Kyoko, Guo, Qianqian, Furuta, Kunimaro, Alhuwaish, Husam, Hirsova, Petra, Baheti, Saurabh, Alver, Bonnie, Hlady, Ryan, Robertson, Keith D., Ibrahim, Samar H.

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From days to hours: reporting clinically actionable variants from whole genome sequencing von Middha, Sumit, Baheti, Saurabh, Hart, Steven N, Kocher, Jean-Pierre A

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Statistical method evaluation for differentially methylated CpGs in base resolution next-generation DNA sequencing data von Zhang, Yun, Baheti, Saurabh, Sun, Zhifu

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Monoallelic Mutations to DNAJB11 Cause Atypical Autosomal-Dominant Polycystic Kidney Disease von Cornec-Le Gall, Emilie, Olson, Rory J., Besse, Whitney, Heyer, Christina M., Gainullin, Vladimir G., Smith, Jessica M., Audrézet, Marie-Pierre, Hopp, Katharina, Porath, Binu, Shi, Beili, Baheti, Saurabh, Senum, Sarah R., Arroyo, Jennifer, Madsen, Charles D., Férec, Claude, Joly, Dominique, Jouret, François, Fikri-Benbrahim, Oussamah, Charasse, Christophe, Coulibaly, Jean-Marie, Yu, Alan S., Khalili, Korosh, Pei, York, Somlo, Stefan, Le Meur, Yannick, Torres, Vicente E., Harris, Peter C.

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REVEL: An Ensemble Method for Predicting the Pathogenicity of Rare Missense Variants von Ioannidis, Nilah M., Rothstein, Joseph H., Pejaver, Vikas, Middha, Sumit, McDonnell, Shannon K., Baheti, Saurabh, Musolf, Anthony, Li, Qing, Holzinger, Emily, Karyadi, Danielle, Cannon-Albright, Lisa A., Teerlink, Craig C., Stanford, Janet L., Isaacs, William B., Xu, Jianfeng, Cooney, Kathleen A., Lange, Ethan M., Schleutker, Johanna, Carpten, John D., Powell, Isaac J., Cussenot, Olivier, Cancel-Tassin, Geraldine, Giles, Graham G., MacInnis, Robert J., Maier, Christiane, Hsieh, Chih-Lin, Wiklund, Fredrik, Catalona, William J., Foulkes, William D., Mandal, Diptasri, Eeles, Rosalind A., Kote-Jarai, Zsofia, Bustamante, Carlos D., Schaid, Daniel J., Hastie, Trevor, Ostrander, Elaine A., Bailey-Wilson, Joan E., Radivojac, Predrag, Thibodeau, Stephen N., Whittemore, Alice S., Sieh, Weiva

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