Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma von Robertson, A. Gordon, Lichtenberg, Tara M., Else, Tobias, Ling, Shiyun, Jefferys, Stuart R., Wenz, Brandon, Korpershoek, Esther, Amelio, Antonio L., Makowski, Liza, Gimenez-Roqueplo, Anne-Paule, Amar, Laurence, Arachchi, Harindra, Asa, Sylvia L., Balasundaram, Miruna, Balu, Saianand, Benz, Christopher, Bodenheimer, Tom, Boice, Lori, Bowen, Jay, Brooks, Denise, Cherniack, Andrew D., Cho, Juok, Cope, Leslie, Danilova, Ludmila, Deutschbein, Timo, Dhalla, Noreen, Eng, Charis, Eschbacher, Jennifer, Fassnacht, Martin, Ferguson, Martin L., Fiddes, Ian, Fishbein, Lauren, Frazer, Scott, Gastier-Foster, Julie M., Getz, Gad, Ghayee, Hans K., Haussler, David, Hayes, D. Neil, Heiman, David I., Hoadley, Katherine A., Holt, Robert A., Huang, Mei, Johnson, Amy R., Jones, Steven J.M., Kebebew, Electron, Korpershoek, Esther, Lee, Darlene, Lerario, Antonio, Leshchiner, Ignaty, Lin, Pei, Liu, Jia, Lolla, Laxmi, Lotan, Yair, Lu, Yiling, Makowski, Liza, Mallery, David, Marra, Marco A., Merino, Maria J., Mete, Ozgur, Meyerson, Matthew, Morris, Scott, Mose, Lisle E., Naresh, Rashi, Newton, Yulia, Ng, Sam, Ni, Ying, Pacak, Karel, Paul, Evan, Penny, Robert, Pihl, Todd, Rao, Arjun, Roach, Jeffrey, Salama, Sofie, Saller, Charles, Sandusky, George, Sbiera, Silviu, Schein, Jacqueline E., Schumacher, Steven E., Shelton, Candace, Shelton, Troy, Sokolov, Artem, Soloway, Matthew G., Thorne, Leigh B., Timmers, Henri J., Tse, Kane, van Berkel, Anouk, Veluvolu, Umadevi, Voet, Doug, Wan, Yunhu, Wang, Tracy S., Weinstein, John N., Wenz, Brandon, Wilkerson, Matthew D., Wise, Lisa, Wong, Christopher, Zhang, Jiashan (Julia), Zhu, Jingchun, Zmuda, Erik, Pacak, Karel, Wilkerson, Matthew D.

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Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open clini... von Guinney, Justin, PhD, Wang, Tao, PhD, Laajala, Teemu D, MSc, Winner, Kimberly Kanigel, PhD, Bare, J Christopher, BS, Neto, Elias Chaibub, PhD, Khan, Suleiman A, PhD, Peddinti, Gopal, PhD, Airola, Antti, PhD, Pahikkala, Tapio, PhD, Mirtti, Tuomas, MD, Yu, Thomas, BS, Bot, Brian M, MS, Shen, Liji, PhD, Abdallah, Kald, MD, Norman, Thea, PhD, Friend, Stephen, MD, Stolovitzky, Gustavo, PhD, Soule, Howard, PhD, Sweeney, Christopher J, MBBS, Ryan, Charles J, Prof, Scher, Howard I, Prof, Sartor, Oliver, Prof, Xie, Yang, PhD, Aittokallio, Tero, Prof, Zhou, Fang Liz, MD, Costello, James C, Dr

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Using native and syntenically mapped cDNA alignments to improve de novo gene finding von Stanke, Mario, Diekhans, Mark, Baertsch, Robert, Haussler, David

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A basal stem cell signature identifies aggressive prostate cancer phenotypes von Smith, Bryan A., Sokolov, Artem, Uzunangelov, Vladislav, Baertsch, Robert, Newton, Yulia, Graim, Kiley, Mathis, Colleen, Cheng, Donghui, Stuart, Joshua M., Witte, Owen N.

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Evolution's Cauldron: Duplication, Deletion, and Rearrangement in the Mouse and Human Genomes von Kent, W. James, Baertsch, Robert, Hinrichs, Angie, Miller, Webb, Haussler, David

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Pathway-Based Genomics Prediction using Generalized Elastic Net von Sokolov, Artem, Carlin, Daniel E, Paull, Evan O, Baertsch, Robert, Stuart, Joshua M

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Speciation network in Laurasiatheria: retrophylogenomic signals von Doronina, Liliya, Churakov, Gennady, Kuritzin, Andrej, Shi, Jingjing, Baertsch, Robert, Clawson, Hiram, Schmitz, Jürgen

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TumorMap: Exploring the Molecular Similarities of Cancer Samples in an Interactive Portal von Newton, Yulia, Novak, Adam M, Swatloski, Teresa, McColl, Duncan C, Chopra, Sahil, Graim, Kiley, Weinstein, Alana S, Baertsch, Robert, Salama, Sofie R, Ellrott, Kyle, Chopra, Manu, Goldstein, Theodore C, Haussler, David, Morozova, Olena, Stuart, Joshua M

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The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes von Pruitt, Kim D, Harrow, Jennifer, Harte, Rachel A, Wallin, Craig, Diekhans, Mark, Maglott, Donna R, Searle, Steve, Farrell, Catherine M, Loveland, Jane E, Ruef, Barbara J, Hart, Elizabeth, Suner, Marie-Marthe, Landrum, Melissa J, Aken, Bronwen, Ayling, Sarah, Baertsch, Robert, Fernandez-Banet, Julio, Cherry, Joshua L, Curwen, Val, Dicuccio, Michael, Kellis, Manolis, Lee, Jennifer, Lin, Michael F, Schuster, Michael, Shkeda, Andrew, Amid, Clara, Brown, Garth, Dukhanina, Oksana, Frankish, Adam, Hart, Jennifer, Maidak, Bonnie L, Mudge, Jonathan, Murphy, Michael R, Murphy, Terence, Rajan, Jeena, Rajput, Bhanu, Riddick, Lillian D, Snow, Catherine, Steward, Charles, Webb, David, Weber, Janet A, Wilming, Laurens, Wu, Wenyu, Birney, Ewan, Haussler, David, Hubbard, Tim, Ostell, James, Durbin, Richard, Lipman, David

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N-Myc Drives Neuroendocrine Prostate Cancer Initiated from Human Prostate Epithelial Cells von Lee, John K., Phillips, John W., Smith, Bryan A., Park, Jung Wook, Stoyanova, Tanya, McCaffrey, Erin F., Baertsch, Robert, Sokolov, Artem, Meyerowitz, Justin G., Mathis, Colleen, Cheng, Donghui, Stuart, Joshua M., Shokat, Kevan M., Gustafson, W. Clay, Huang, Jiaoti, Witte, Owen N.

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Prototyping a precision oncology 3.0 rapid learning platform von Sweetnam, Connor, Mocellin, Simone, Krauthammer, Michael, Knopf, Nathaniel, Baertsch, Robert, Shrager, Jeff

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Exploring Massive Incomplete Lineage Sorting in Arctoids (Laurasiatheria, Carnivora) von Doronina, Liliya, Churakov, Gennady, Shi, Jingjing, Brosius, Jürgen, Baertsch, Robert, Clawson, Hiram, Schmitz, Jürgen

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Current status and new features of the Consensus Coding Sequence database von Farrell, Catherine M, O'Leary, Nuala A, Harte, Rachel A, Loveland, Jane E, Wilming, Laurens G, Wallin, Craig, Diekhans, Mark, Barrell, Daniel, Searle, Stephen M J, Aken, Bronwen, Hiatt, Susan M, Frankish, Adam, Suner, Marie-Marthe, Rajput, Bhanu, Steward, Charles A, Brown, Garth R, Bennett, Ruth, Murphy, Michael, Wu, Wendy, Kay, Mike P, Hart, Jennifer, Rajan, Jeena, Weber, Janet, Snow, Catherine, Riddick, Lillian D, Hunt, Toby, Webb, David, Thomas, Mark, Tamez, Pamela, Rangwala, Sanjida H, McGarvey, Kelly M, Pujar, Shashikant, Shkeda, Andrei, Mudge, Jonathan M, Gonzalez, Jose M, Gilbert, James G R, Trevanion, Stephen J, Baertsch, Robert, Harrow, Jennifer L, Hubbard, Tim, Ostell, James M, Haussler, David, Pruitt, Kim D

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Retrocopy contributions to the evolution of the human genome von Baertsch, Robert, Diekhans, Mark, Kent, W James, Haussler, David, Brosius, Jürgen

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Aligning multiple genomic sequences with the threaded blockset aligner von Blanchette, Mathieu, Kent, W James, Riemer, Cathy, Elnitski, Laura, Smit, Arian F A, Roskin, Krishna M, Baertsch, Robert, Rosenbloom, Kate, Clawson, Hiram, Green, Eric D, Haussler, David, Miller, Webb

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Hotspots of mammalian chromosomal evolution von Bailey, Jeffrey A, Baertsch, Robert, Kent, W James, Haussler, David, Eichler, Evan E

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Human-mouse alignments with BLASTZ von Schwartz, Scott, Kent, W James, Smit, Arian, Zhang, Zheng, Baertsch, Robert, Hardison, Ross C, Haussler, David, Miller, Webb

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Forces shaping the fastest evolving regions in the human genome von Pollard, Katherine S, Salama, Sofie R, King, Bryan, Kern, Andrew D, Dreszer, Tim, Katzman, Sol, Siepel, Adam, Pedersen, Jakob S, Bejerano, Gill, Baertsch, Robert, Rosenbloom, Kate R, Kent, Jim, Haussler, David

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28-way vertebrate alignment and conservation track in the UCSC Genome Browser von Miller, Webb, Rosenbloom, Kate, Hardison, Ross C, Hou, Minmei, Taylor, James, Raney, Brian, Burhans, Richard, King, David C, Baertsch, Robert, Blankenberg, Daniel, Kosakovsky Pond, Sergei L, Nekrutenko, Anton, Giardine, Belinda, Harris, Robert S, Tyekucheva, Svitlana, Diekhans, Mark, Pringle, Thomas H, Murphy, William J, Lesk, Arthur, Weinstock, George M, Lindblad-Toh, Kerstin, Gibbs, Richard A, Lander, Eric S, Siepel, Adam, Haussler, David, Kent, W James

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Genome sequence of the basal haplorrhine primate Tarsius syrichta reveals unusual insertions von Schmitz, Jürgen, Noll, Angela, Raabe, Carsten A., Churakov, Gennady, Voss, Reinhard, Kiefmann, Martin, Rozhdestvensky, Timofey, Brosius, Jürgen, Baertsch, Robert, Clawson, Hiram, Roos, Christian, Zimin, Aleksey, Minx, Patrick, Montague, Michael J., Wilson, Richard K., Warren, Wesley C.

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